模拟水在不同水体系中的手性

Khakhalin Andrey Vladimirovich, Gradoboeva Olga Nikolaevna
{"title":"模拟水在不同水体系中的手性","authors":"Khakhalin Andrey Vladimirovich, Gradoboeva Olga Nikolaevna","doi":"10.5772/INTECHOPEN.81770","DOIUrl":null,"url":null,"abstract":"The research addresses the problem of chirality existence in modeling water with various impurity molecules using new numerical algorithm of chirality deter-mination. It is based on asymmetry analysis of molecular system composed of water molecules. The following molecular systems are investigated: (1) small water clusters such as (H 2 O) n , K + (H 2 O) m , and Na + (H 2 O) m (n = 4÷8, m = 5÷10) at temperature 1 K; (2) (H 2 O) n , K + (H 2 O) p , and Na + (H 2 O) p (n = 4÷9, p = 5÷8) at temperature 300 K; and (3) chiral biological molecules of L-valine, D-valine, L-glycerose, and D-glycerose and left or right water clusters (H 2 O) 4 with water molecule ’ s shell with thickness varied from 4 to 14 Å with a step of 2 Å. The systems (1), (2) are investigated by Monte Carlo method and the interaction is simulated with Poltev-Malenkov potentials. Systems (3) are initiated using Solvate software, and then aqueous systems are optimized by the conjugate gradient algorithm using the MMFF94 potential. It is revealed that there is no predominance of right-handed or lefthanded substructures in all studied configurations of water molecules. But in small aqueous systems (2), (3), the number of types of water structures, taking into account chirality, depends on the presence of impurity ion and its type.","PeriodicalId":447319,"journal":{"name":"Chirality from Molecular Electronic States","volume":"128 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2018-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Chirality Properties of Modeling Water in Different Aqueous Systems\",\"authors\":\"Khakhalin Andrey Vladimirovich, Gradoboeva Olga Nikolaevna\",\"doi\":\"10.5772/INTECHOPEN.81770\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The research addresses the problem of chirality existence in modeling water with various impurity molecules using new numerical algorithm of chirality deter-mination. It is based on asymmetry analysis of molecular system composed of water molecules. The following molecular systems are investigated: (1) small water clusters such as (H 2 O) n , K + (H 2 O) m , and Na + (H 2 O) m (n = 4÷8, m = 5÷10) at temperature 1 K; (2) (H 2 O) n , K + (H 2 O) p , and Na + (H 2 O) p (n = 4÷9, p = 5÷8) at temperature 300 K; and (3) chiral biological molecules of L-valine, D-valine, L-glycerose, and D-glycerose and left or right water clusters (H 2 O) 4 with water molecule ’ s shell with thickness varied from 4 to 14 Å with a step of 2 Å. The systems (1), (2) are investigated by Monte Carlo method and the interaction is simulated with Poltev-Malenkov potentials. Systems (3) are initiated using Solvate software, and then aqueous systems are optimized by the conjugate gradient algorithm using the MMFF94 potential. It is revealed that there is no predominance of right-handed or lefthanded substructures in all studied configurations of water molecules. But in small aqueous systems (2), (3), the number of types of water structures, taking into account chirality, depends on the presence of impurity ion and its type.\",\"PeriodicalId\":447319,\"journal\":{\"name\":\"Chirality from Molecular Electronic States\",\"volume\":\"128 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2018-11-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Chirality from Molecular Electronic States\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.5772/INTECHOPEN.81770\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chirality from Molecular Electronic States","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5772/INTECHOPEN.81770","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

采用新的手性确定数值算法,解决了含各种杂质分子水模型中手性存在的问题。它是基于水分子组成的分子体系的不对称分析。研究了以下分子体系:(1)在1 K温度下,(h2o) n、K + (h2o) m和Na + (h2o) m (n = 4÷8, m = 5÷10)等小水团;(2) 300 K时的(h2o) n、K + (h2o) p、Na + (h2o) p (n = 4÷9, p = 5÷8);(3) l -缬氨酸、d -缬氨酸、l -甘油和d -甘油的手性生物分子与左或右水簇(h2o) 4,水分子的壳厚度为4 ~ 14 Å,步骤为2 Å。用蒙特卡罗方法研究了系统(1)、(2)的相互作用,并用Poltev-Malenkov势进行了模拟。使用Solvate软件启动系统(3),然后使用MMFF94电位通过共轭梯度算法对水系统进行优化。结果表明,在所有研究的水分子构型中,不存在右手或左手亚结构的优势。但在小型水体系(2)、(3)中,考虑手性的水结构类型的数量取决于杂质离子的存在及其类型。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Chirality Properties of Modeling Water in Different Aqueous Systems
The research addresses the problem of chirality existence in modeling water with various impurity molecules using new numerical algorithm of chirality deter-mination. It is based on asymmetry analysis of molecular system composed of water molecules. The following molecular systems are investigated: (1) small water clusters such as (H 2 O) n , K + (H 2 O) m , and Na + (H 2 O) m (n = 4÷8, m = 5÷10) at temperature 1 K; (2) (H 2 O) n , K + (H 2 O) p , and Na + (H 2 O) p (n = 4÷9, p = 5÷8) at temperature 300 K; and (3) chiral biological molecules of L-valine, D-valine, L-glycerose, and D-glycerose and left or right water clusters (H 2 O) 4 with water molecule ’ s shell with thickness varied from 4 to 14 Å with a step of 2 Å. The systems (1), (2) are investigated by Monte Carlo method and the interaction is simulated with Poltev-Malenkov potentials. Systems (3) are initiated using Solvate software, and then aqueous systems are optimized by the conjugate gradient algorithm using the MMFF94 potential. It is revealed that there is no predominance of right-handed or lefthanded substructures in all studied configurations of water molecules. But in small aqueous systems (2), (3), the number of types of water structures, taking into account chirality, depends on the presence of impurity ion and its type.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信