Khakhalin Andrey Vladimirovich, Gradoboeva Olga Nikolaevna
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引用次数: 0
摘要
采用新的手性确定数值算法,解决了含各种杂质分子水模型中手性存在的问题。它是基于水分子组成的分子体系的不对称分析。研究了以下分子体系:(1)在1 K温度下,(h2o) n、K + (h2o) m和Na + (h2o) m (n = 4÷8, m = 5÷10)等小水团;(2) 300 K时的(h2o) n、K + (h2o) p、Na + (h2o) p (n = 4÷9, p = 5÷8);(3) l -缬氨酸、d -缬氨酸、l -甘油和d -甘油的手性生物分子与左或右水簇(h2o) 4,水分子的壳厚度为4 ~ 14 Å,步骤为2 Å。用蒙特卡罗方法研究了系统(1)、(2)的相互作用,并用Poltev-Malenkov势进行了模拟。使用Solvate软件启动系统(3),然后使用MMFF94电位通过共轭梯度算法对水系统进行优化。结果表明,在所有研究的水分子构型中,不存在右手或左手亚结构的优势。但在小型水体系(2)、(3)中,考虑手性的水结构类型的数量取决于杂质离子的存在及其类型。
Chirality Properties of Modeling Water in Different Aqueous Systems
The research addresses the problem of chirality existence in modeling water with various impurity molecules using new numerical algorithm of chirality deter-mination. It is based on asymmetry analysis of molecular system composed of water molecules. The following molecular systems are investigated: (1) small water clusters such as (H 2 O) n , K + (H 2 O) m , and Na + (H 2 O) m (n = 4÷8, m = 5÷10) at temperature 1 K; (2) (H 2 O) n , K + (H 2 O) p , and Na + (H 2 O) p (n = 4÷9, p = 5÷8) at temperature 300 K; and (3) chiral biological molecules of L-valine, D-valine, L-glycerose, and D-glycerose and left or right water clusters (H 2 O) 4 with water molecule ’ s shell with thickness varied from 4 to 14 Å with a step of 2 Å. The systems (1), (2) are investigated by Monte Carlo method and the interaction is simulated with Poltev-Malenkov potentials. Systems (3) are initiated using Solvate software, and then aqueous systems are optimized by the conjugate gradient algorithm using the MMFF94 potential. It is revealed that there is no predominance of right-handed or lefthanded substructures in all studied configurations of water molecules. But in small aqueous systems (2), (3), the number of types of water structures, taking into account chirality, depends on the presence of impurity ion and its type.