参数化匹配的dawg:在线构建和相关索引结构

Katsuhito Nakashima, Noriki Fujisato, Diptarama Hendrian, Yuto Nakashima, Ryo Yoshinaka, Shunsuke Inenaga, H. Bannai, A. Shinohara, M. Takeda
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引用次数: 4

摘要

两根弦 $x$ 和 $y$ 结束 $\Sigma \cup \Pi$ 如果存在重命名双注入,则称为参数化匹配(p-match) $f:\Sigma \cup \Pi \rightarrow \Sigma \cup \Pi$ 这就是同一性 $\Sigma$ 然后变换 $x$ 到 $y$ (反之亦然)。p匹配问题是在文本中查找与给定模式p匹配的子字符串。本文提出了参数化后缀自动机(p-suffix automata)和参数化有向无环词图(PDAWGs),它们是后缀自动机和DAWGs的p匹配版本。虽然后缀自动机和dawg对于标准字符串是等价的,但我们证明p-后缀自动机可以具有 $\Theta(n^2)$ 节点和边,而pdawg只有 $O(n)$ 节点和边,其中 $n$ 输入字符串的长度。我们也给予 $O(n |\Pi| \log (|\Pi| + |\Sigma|))$时间 $O(n)$-space算法,以从左到右的在线方式构建PDAWG。结果表明,参数化后缀树也可以在相同的时间和空间中以从右向左的在线方式构建。我们还讨论了参数化的紧凑dawg。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
DAWGs for parameterized matching: online construction and related indexing structures
Two strings $x$ and $y$ over $\Sigma \cup \Pi$ of equal length are said to parameterized match (p-match) if there is a renaming bijection $f:\Sigma \cup \Pi \rightarrow \Sigma \cup \Pi$ that is identity on $\Sigma$ and transforms $x$ to $y$ (or vice versa). The p-matching problem is to look for substrings in a text that p-match a given pattern. In this paper, we propose parameterized suffix automata (p-suffix automata) and parameterized directed acyclic word graphs (PDAWGs) which are the p-matching versions of suffix automata and DAWGs. While suffix automata and DAWGs are equivalent for standard strings, we show that p-suffix automata can have $\Theta(n^2)$ nodes and edges but PDAWGs have only $O(n)$ nodes and edges, where $n$ is the length of an input string. We also give $O(n |\Pi| \log (|\Pi| + |\Sigma|))$-time $O(n)$-space algorithm that builds the PDAWG in a left-to-right online manner. As a byproduct, it is shown that the parameterized suffix tree for the reversed string can also be built in the same time and space, in a right-to-left online manner. We also discuss parameterized compact DAWGs.
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