玉米胚叶早期发育的计算模型

Charles C. N. Wang, Pei-Chun Chang, P. Sheu, J. Tsai
{"title":"玉米胚叶早期发育的计算模型","authors":"Charles C. N. Wang, Pei-Chun Chang, P. Sheu, J. Tsai","doi":"10.1109/BIBE.2018.00076","DOIUrl":null,"url":null,"abstract":"Maize is a well-studied crop. It has been used as a model plant for C4 studies of photosynthesis, as its leaves possess the Kranz Structure (KS). Unfortunately, only few studies addressed the use of computational models to describe dry maize. In particular, the mechanism of KS formation remains unclear during leaf development. This study aims to develop a computational model to answer the following two questions for leaf development in dry maze: (1) How Auxin inhibits BDL, and (2) How the MP transcription activates BDL in the seed of dry maize in early stages of embryonic leaves. We first analyze dry maize based on the S-systems model and compare it with two different regulatory networks: (1) Auxin inhibits BODENLOS (BDL), and (2) MONOPTEROS (MP) activates BODENLOS (BDL). Our hypotheses are: (1) Auxin does not inhibit BDL, and (2) MP does not activate BDL. In the second stage, we compare the S-systems parameter estimation method (SPEM) and the engineering method to analyze the two regulatory networks. Our result suggests a general mechanism for studying how the transient accumulation of Auxin activates self-sustaining and how, similar to other genetic switches, it results in unequivocal developmental responses of leaves in dry maize. The MP activates BDL are very important to the Auxin signaling mediated by MP and BDL proteins which are essential for cell-fate specification events in early embryogenesis of maize.","PeriodicalId":127507,"journal":{"name":"2018 IEEE 18th International Conference on Bioinformatics and Bioengineering (BIBE)","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2018-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Computational Modeling of the Early Development of Embryonic Leaves in Maize\",\"authors\":\"Charles C. N. Wang, Pei-Chun Chang, P. Sheu, J. Tsai\",\"doi\":\"10.1109/BIBE.2018.00076\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Maize is a well-studied crop. It has been used as a model plant for C4 studies of photosynthesis, as its leaves possess the Kranz Structure (KS). Unfortunately, only few studies addressed the use of computational models to describe dry maize. In particular, the mechanism of KS formation remains unclear during leaf development. This study aims to develop a computational model to answer the following two questions for leaf development in dry maze: (1) How Auxin inhibits BDL, and (2) How the MP transcription activates BDL in the seed of dry maize in early stages of embryonic leaves. We first analyze dry maize based on the S-systems model and compare it with two different regulatory networks: (1) Auxin inhibits BODENLOS (BDL), and (2) MONOPTEROS (MP) activates BODENLOS (BDL). Our hypotheses are: (1) Auxin does not inhibit BDL, and (2) MP does not activate BDL. In the second stage, we compare the S-systems parameter estimation method (SPEM) and the engineering method to analyze the two regulatory networks. Our result suggests a general mechanism for studying how the transient accumulation of Auxin activates self-sustaining and how, similar to other genetic switches, it results in unequivocal developmental responses of leaves in dry maize. The MP activates BDL are very important to the Auxin signaling mediated by MP and BDL proteins which are essential for cell-fate specification events in early embryogenesis of maize.\",\"PeriodicalId\":127507,\"journal\":{\"name\":\"2018 IEEE 18th International Conference on Bioinformatics and Bioengineering (BIBE)\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2018-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2018 IEEE 18th International Conference on Bioinformatics and Bioengineering (BIBE)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/BIBE.2018.00076\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2018 IEEE 18th International Conference on Bioinformatics and Bioengineering (BIBE)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/BIBE.2018.00076","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

玉米是一种经过充分研究的作物。由于其叶片具有克兰兹结构(KS),它已被用作C4光合作用研究的模式植物。不幸的是,只有少数研究涉及使用计算模型来描述干玉米。特别是叶片发育过程中KS的形成机制尚不清楚。本研究旨在建立一个计算模型来回答干燥迷宫中叶片发育的两个问题:(1)生长素如何抑制BDL;(2)干玉米胚叶早期种子中MP转录如何激活BDL。本文首先基于s系统模型对干玉米进行了分析,并比较了两种不同的调控网络:(1)生长素抑制BODENLOS (BDL), (2) MONOPTEROS (MP)激活BODENLOS (BDL)。我们的假设是:(1)生长素不抑制BDL, (2) MP不激活BDL。在第二阶段,我们比较了s系统参数估计方法(SPEM)和工程方法来分析两个调节网络。我们的研究结果为研究生长素的瞬时积累如何激活自我维持以及与其他遗传开关类似,它如何导致干玉米叶片的明确发育响应提供了一般机制。MP激活BDL对玉米早期胚胎发生过程中由MP和BDL蛋白介导的生长素信号转导具有重要意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Computational Modeling of the Early Development of Embryonic Leaves in Maize
Maize is a well-studied crop. It has been used as a model plant for C4 studies of photosynthesis, as its leaves possess the Kranz Structure (KS). Unfortunately, only few studies addressed the use of computational models to describe dry maize. In particular, the mechanism of KS formation remains unclear during leaf development. This study aims to develop a computational model to answer the following two questions for leaf development in dry maze: (1) How Auxin inhibits BDL, and (2) How the MP transcription activates BDL in the seed of dry maize in early stages of embryonic leaves. We first analyze dry maize based on the S-systems model and compare it with two different regulatory networks: (1) Auxin inhibits BODENLOS (BDL), and (2) MONOPTEROS (MP) activates BODENLOS (BDL). Our hypotheses are: (1) Auxin does not inhibit BDL, and (2) MP does not activate BDL. In the second stage, we compare the S-systems parameter estimation method (SPEM) and the engineering method to analyze the two regulatory networks. Our result suggests a general mechanism for studying how the transient accumulation of Auxin activates self-sustaining and how, similar to other genetic switches, it results in unequivocal developmental responses of leaves in dry maize. The MP activates BDL are very important to the Auxin signaling mediated by MP and BDL proteins which are essential for cell-fate specification events in early embryogenesis of maize.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信