跨计算机阵列上的分子动力学

J. Perram, H.G. Petersen
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引用次数: 1

摘要

报告了在 10 台计算机系统上实施分子动力学模拟的情况。实施过程充分利用了问题的几何并行性。通过计算和通信开销的简单模型,可以预测问题规模与处理器数量的最佳比例。实施过程充分利用了领域分解范式,其中统计力学的可压缩性定理保证了负载平衡。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Molecular dynamics on transputer arrays
The implementation of a molecular dynamics simulation on a 10 transputer system is reported. The implementation exploits fully the geometric parallelism of the problem. A simple model of the computing and communications overheads leads to predictions of the optimal scaling of the problem size with the number of processors. The implementation exploits fully the domain decomposition paradigm in which load balancing is guaranteed by the compressibility theorem of statistical mechanics.<>
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