Taimur Hassan, H. Raja, Bilal Hassan, M. Akram, J. Dias, N. Werghi
{"title":"复合视网膜眼底和OCT数据集分级黄斑和青光眼疾病","authors":"Taimur Hassan, H. Raja, Bilal Hassan, M. Akram, J. Dias, N. Werghi","doi":"10.1109/ICoDT255437.2022.9787482","DOIUrl":null,"url":null,"abstract":"Retinopathy represents a group of retinal diseases that causes severe visual impairments and even blindness. Many researchers have publicly released datasets containing fundus or optical coherence tomography (OCT) scans to screen retinal diseases like macular edema (ME) and age-related macular degeneration (AMD). These datasets also contain clinical markings to analyze the retinal layers and retinal lesions within normal and abnormal pathologies. However, to the best of our knowledge, no dataset provides the clinically graded fundus and OCT images reflecting the geographic AMD, neovascular AMD, acute central serous retinopathy (CSR), chronic CSR, centrally involved DME (ci-DME), and glaucomatous pathologies. Furthermore, the majority of the publicly available OCT datasets are acquired through Spectralis Machines, which limits the thorough evaluation of autonomous frameworks to screen retinal pathologies irrespective of the scanner specifications. To overcome these challenges, we present a novel dataset containing composite fundus and OCT scans of each patient, along with detailed annotations for extracting the retinal layers and retinal lesions. Also, contrary to its competitors, the proposed dataset is acquired through Topcon 3D OCT 2000 machine that can be utilized for training (or evaluating) any autonomous frameworks to give the lesion-aware screening and severity grading of the above-mentioned retinal diseases as per the clinical standards. Moreover, in this paper, we are also releasing the retinal annotation software alongside the proposed dataset. This software can help clinicians in quickly marking both fundus and OCT scans, which can be saved later on in any image format. Overall, the proposed dataset contains 9,268 OCT scans and 180 fundus scans from 105 subjects depicting healthy, ci-DME, geographic AMD, neovascular AMD, acute CSR, chronic CSR, and glaucomic pathologies.","PeriodicalId":291030,"journal":{"name":"2022 2nd International Conference on Digital Futures and Transformative Technologies (ICoDT2)","volume":"1 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2022-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"A Composite Retinal Fundus and OCT Dataset to Grade Macular and Glaucomatous Disorders\",\"authors\":\"Taimur Hassan, H. Raja, Bilal Hassan, M. Akram, J. Dias, N. Werghi\",\"doi\":\"10.1109/ICoDT255437.2022.9787482\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Retinopathy represents a group of retinal diseases that causes severe visual impairments and even blindness. 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To overcome these challenges, we present a novel dataset containing composite fundus and OCT scans of each patient, along with detailed annotations for extracting the retinal layers and retinal lesions. Also, contrary to its competitors, the proposed dataset is acquired through Topcon 3D OCT 2000 machine that can be utilized for training (or evaluating) any autonomous frameworks to give the lesion-aware screening and severity grading of the above-mentioned retinal diseases as per the clinical standards. Moreover, in this paper, we are also releasing the retinal annotation software alongside the proposed dataset. This software can help clinicians in quickly marking both fundus and OCT scans, which can be saved later on in any image format. 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引用次数: 1
摘要
视网膜病变是一组视网膜疾病,会导致严重的视觉损伤甚至失明。许多研究人员已经公开发布了包含眼底或光学相干断层扫描(OCT)扫描的数据集,以筛查黄斑水肿(ME)和年龄相关性黄斑变性(AMD)等视网膜疾病。这些数据集还包含临床标记,用于分析正常和异常病理下的视网膜层和视网膜病变。然而,据我们所知,没有数据集提供临床分级的眼底和OCT图像,反映地理性AMD、新生血管性AMD、急性中枢性浆液性视网膜病变(CSR)、慢性CSR、中央累及性DME (ci-DME)和青光眼病理。此外,大多数公开可用的OCT数据集都是通过Spectralis Machines获得的,这限制了对自主框架的全面评估,无论扫描仪规格如何,都无法筛选视网膜病变。为了克服这些挑战,我们提出了一个新的数据集,其中包含每个患者的复合眼底和OCT扫描,以及提取视网膜层和视网膜病变的详细注释。此外,与其竞争对手不同,所提出的数据集是通过Topcon 3D OCT 2000机器获得的,该机器可用于训练(或评估)任何自主框架,以根据临床标准对上述视网膜疾病进行病变感知筛查和严重程度分级。此外,在本文中,我们还发布了视网膜注释软件以及提出的数据集。该软件可以帮助临床医生快速标记眼底和OCT扫描,可以在以后以任何图像格式保存。总体而言,该数据集包含来自105名受试者的9,268次OCT扫描和180次眼底扫描,描绘了健康、ci-DME、地理AMD、新生血管性AMD、急性CSR、慢性CSR和青光眼病变。
A Composite Retinal Fundus and OCT Dataset to Grade Macular and Glaucomatous Disorders
Retinopathy represents a group of retinal diseases that causes severe visual impairments and even blindness. Many researchers have publicly released datasets containing fundus or optical coherence tomography (OCT) scans to screen retinal diseases like macular edema (ME) and age-related macular degeneration (AMD). These datasets also contain clinical markings to analyze the retinal layers and retinal lesions within normal and abnormal pathologies. However, to the best of our knowledge, no dataset provides the clinically graded fundus and OCT images reflecting the geographic AMD, neovascular AMD, acute central serous retinopathy (CSR), chronic CSR, centrally involved DME (ci-DME), and glaucomatous pathologies. Furthermore, the majority of the publicly available OCT datasets are acquired through Spectralis Machines, which limits the thorough evaluation of autonomous frameworks to screen retinal pathologies irrespective of the scanner specifications. To overcome these challenges, we present a novel dataset containing composite fundus and OCT scans of each patient, along with detailed annotations for extracting the retinal layers and retinal lesions. Also, contrary to its competitors, the proposed dataset is acquired through Topcon 3D OCT 2000 machine that can be utilized for training (or evaluating) any autonomous frameworks to give the lesion-aware screening and severity grading of the above-mentioned retinal diseases as per the clinical standards. Moreover, in this paper, we are also releasing the retinal annotation software alongside the proposed dataset. This software can help clinicians in quickly marking both fundus and OCT scans, which can be saved later on in any image format. Overall, the proposed dataset contains 9,268 OCT scans and 180 fundus scans from 105 subjects depicting healthy, ci-DME, geographic AMD, neovascular AMD, acute CSR, chronic CSR, and glaucomic pathologies.