利用差异表达基因和mirna联合分析鉴定阿尔茨海默病的潜在生物标志物

Utsha Das, Md. Al Mehedi Hasan, Julia Rahman
{"title":"利用差异表达基因和mirna联合分析鉴定阿尔茨海默病的潜在生物标志物","authors":"Utsha Das, Md. Al Mehedi Hasan, Julia Rahman","doi":"10.1109/ICAEE48663.2019.8975487","DOIUrl":null,"url":null,"abstract":"Alzheimer’s disease has remained a great concern for recent years. There is no exact cure for Alzheimer’s disease (AD). For the proper understanding of the cause of AD and the treatment of AD, we need biomarker. To identify the biomarkers for Alzheimer’s disease, we need a proper study of the differentially expressed miRNAs (DEMs) and differentially expressed genes (DEGs) for AD. To identify the DEGs and DEMs, feature selection techniques can be used. Previously, some statistics based feature selection techniques have been used to identify the DEGs and DEMs. It is not up to the mark. More research work and investigation are required in this area. In this paper, we have used Student’s T-test with Hochberg P adjustment to identify the DEGs and DEMs. We have also distinguished the down-regulated and up-regulated genes using the logarithm of the fold change value and Heatmap plot. Then the target genes of DEMs have been listed. Using these target genes and DEGs, biomarkers have been identified. From the results of Student’s T-test, 4 potential biomarkers have been identified. All the files and programs are accessible at https://github.com/UtshaDas/PotentialBiomarkerforAD.","PeriodicalId":138634,"journal":{"name":"2019 5th International Conference on Advances in Electrical Engineering (ICAEE)","volume":"65 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Identification of Potential Biomarker Using Combined Analysis of Differentially Expressed Genes and miRNAs for Alzheimer’s Disease\",\"authors\":\"Utsha Das, Md. Al Mehedi Hasan, Julia Rahman\",\"doi\":\"10.1109/ICAEE48663.2019.8975487\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Alzheimer’s disease has remained a great concern for recent years. There is no exact cure for Alzheimer’s disease (AD). For the proper understanding of the cause of AD and the treatment of AD, we need biomarker. To identify the biomarkers for Alzheimer’s disease, we need a proper study of the differentially expressed miRNAs (DEMs) and differentially expressed genes (DEGs) for AD. To identify the DEGs and DEMs, feature selection techniques can be used. Previously, some statistics based feature selection techniques have been used to identify the DEGs and DEMs. It is not up to the mark. More research work and investigation are required in this area. In this paper, we have used Student’s T-test with Hochberg P adjustment to identify the DEGs and DEMs. We have also distinguished the down-regulated and up-regulated genes using the logarithm of the fold change value and Heatmap plot. Then the target genes of DEMs have been listed. Using these target genes and DEGs, biomarkers have been identified. From the results of Student’s T-test, 4 potential biomarkers have been identified. All the files and programs are accessible at https://github.com/UtshaDas/PotentialBiomarkerforAD.\",\"PeriodicalId\":138634,\"journal\":{\"name\":\"2019 5th International Conference on Advances in Electrical Engineering (ICAEE)\",\"volume\":\"65 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2019-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2019 5th International Conference on Advances in Electrical Engineering (ICAEE)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/ICAEE48663.2019.8975487\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2019 5th International Conference on Advances in Electrical Engineering (ICAEE)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ICAEE48663.2019.8975487","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

阿尔茨海默病近年来一直备受关注。阿尔茨海默病(AD)没有确切的治疗方法。为了正确认识阿尔茨海默病的病因和治疗,我们需要生物标志物。为了确定阿尔茨海默病的生物标志物,我们需要对阿尔茨海默病的差异表达mirna (DEMs)和差异表达基因(DEGs)进行适当的研究。为了识别deg和dem,可以使用特征选择技术。以前,一些基于统计的特征选择技术已经被用来识别deg和dem。它没有达到标准。在这方面还需要进行更多的研究和调查。在本文中,我们使用学生t检验与Hochberg P调整来识别deg和dem。我们还利用折叠变化值的对数和热图图区分了下调和上调基因。然后列出了dem的靶基因。利用这些靶基因和deg,已经确定了生物标志物。根据学生t检验的结果,鉴定出4种潜在的生物标志物。所有的文件和程序都可以在https://github.com/UtshaDas/PotentialBiomarkerforAD上访问。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of Potential Biomarker Using Combined Analysis of Differentially Expressed Genes and miRNAs for Alzheimer’s Disease
Alzheimer’s disease has remained a great concern for recent years. There is no exact cure for Alzheimer’s disease (AD). For the proper understanding of the cause of AD and the treatment of AD, we need biomarker. To identify the biomarkers for Alzheimer’s disease, we need a proper study of the differentially expressed miRNAs (DEMs) and differentially expressed genes (DEGs) for AD. To identify the DEGs and DEMs, feature selection techniques can be used. Previously, some statistics based feature selection techniques have been used to identify the DEGs and DEMs. It is not up to the mark. More research work and investigation are required in this area. In this paper, we have used Student’s T-test with Hochberg P adjustment to identify the DEGs and DEMs. We have also distinguished the down-regulated and up-regulated genes using the logarithm of the fold change value and Heatmap plot. Then the target genes of DEMs have been listed. Using these target genes and DEGs, biomarkers have been identified. From the results of Student’s T-test, 4 potential biomarkers have been identified. All the files and programs are accessible at https://github.com/UtshaDas/PotentialBiomarkerforAD.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信