用交叉法模拟血睾酮水平的振荡动力学

A. Sabnis, R. Harrison
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引用次数: 2

摘要

人类血液中的睾酮水平周期性地波动。这种生物化学系统的体内动力学不能用先前报道的数学模型的连续确定性解在硅中模拟。然而,据报道,随机模拟算法(SSA)的使用产生了与实验观察在定性和定量上一致的持续振荡。虽然SSA能够准确地模拟生化网络,但从计算的角度来看,它是极其低效的。在这项工作中,我们尝试使用确定性-随机交叉方法模拟上述模型,用于三组单独的参数。每次计算结果不仅表明存在持续振荡,而且计算时间比相应的SSA解至少低4倍。因此,交叉方法可以作为SSA的可行替代方案,用于模拟系统生物学应用中常见的生化系统。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Simulation of oscillatory dynamics of blood testosterone levels using the crossover method
Blood testosterone levels oscillate periodically in humans. The in vivo dynamics of this biochemical system cannot be simulated in silico using a continuous deterministic solution of a previously reported mathematical model. The use of the stochastic simulation algorithm (SSA), however, has been reported to generate sustained oscillations that are qualitatively and quantitatively consistent with the experimental observations. Although the SSA is capable of accurately simulating a biochemical network, it is extremely inefficient from a computational standpoint. In this work, we have attempted to simulate the above mentioned model using a deterministic-stochastic crossover method, for three separate sets of parameters. Each time, not only did the results show the existence of sustained oscillations but also that the computational time was at least four times lower than the corresponding SSA solution. The crossover method can hence be proposed as a viable alternative to the SSA for simulating biochemical systems that are commonly encountered in systems biology applications.
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