在高维和噪声数据集中寻找相干共簇

Meghana Deodhar, Joydeep Ghosh, Gunjan Gupta, Hyuk Cho, I. Dhillon
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引用次数: 3

摘要

聚类问题通常涉及只有部分数据与问题相关的数据集,例如,在微阵列数据分析中,只有基因的子集在条件/特征的子集内显示内聚表达。大量非信息性数据点和特征的存在使得从这些数据集中寻找连贯和有意义的聚类具有挑战性。此外,由于聚类可以存在于特征空间的不同子空间中,因此与传统的“片面”聚类相比,同时聚类对象和特征的共聚类算法通常更合适。我们提出了鲁棒重叠共聚类(ROCC),这是一个可扩展且非常通用的框架,可解决从大型嘈杂数据集中有效挖掘密集,任意定位,可能重叠的共聚类的问题。ROCC具有几个令人满意的特性,使其非常适合许多实际应用。通过广泛的实验,我们表明,与应用于这项任务的其他几种突出方法相比,我们的方法在识别微阵列数据中具有生物学意义的共簇方面明显更准确。我们还指出了该框架在解决困难的聚类问题方面的其他有趣应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Hunting for Coherent Co-clusters in High Dimensional and Noisy Datasets
Clustering problems often involve datasets where only a part of the data is relevant to the problem, e.g., in microarray data analysis only a subset of the genes show cohesive expressions within a subset of the conditions/features. The existence of a large number of non-informative data points and features makes it challenging to hunt for coherent and meaningful clusters from such datasets. Additionally, since clusters could exist in different subspaces of the feature space, a co-clustering algorithm that simultaneously clusters objects and features is often more suitable as compared to one that is restricted to traditional "one-sided" clustering. We propose Robust Overlapping Co-clustering (ROCC), a scalable and very versatile framework that addresses the problem of efficiently mining dense, arbitrarily positioned, possibly overlapping co-clusters from large, noisy datasets. ROCC has several desirable properties that make it extremely well suited to a number of real life applications. Through extensive experimentation we show that our approach is significantly more accurate in identifying biologically meaningful co-clusters in microarray data as compared to several other prominent approaches that have been applied to this task. We also point out other interesting applications of the proposed framework in solving difficult clustering problems.
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