Yeonjung Lim, Yochan Joung, Gi Gyun Nam, K. Jahng, S. Kim, K. Joh, C. Cha, C. Seong, J. Bae, W. Im, Jang-Cheon Cho
{"title":"2014年在韩国分离的33种未被记录的细菌,属于γ变形菌纲","authors":"Yeonjung Lim, Yochan Joung, Gi Gyun Nam, K. Jahng, S. Kim, K. Joh, C. Cha, C. Seong, J. Bae, W. Im, Jang-Cheon Cho","doi":"10.12651/JSR.2016.5.2.241","DOIUrl":null,"url":null,"abstract":"The class Gammaproteobacteria forms the largest phylogenetic group (at least 180 genera and over 750 species) in the phylum Proteobacteia and members of the class show diverse metabolic pathways and phenotypes (Garrity et al., 2005; Kersters et al., 2006; Williams et al., 2010). In general, all organisms in this class are unicellular and mostly rods, and are abundant in various freshwater habitats (Kim et al., 2012a; Zhang et al., 2014; Keller-Costa et al., 2014), seawater habitats (Giovannoni et al., 1990; Cho and Giovannoni, 2004; Du et al., 2009; Yan et al., 2011; Wang et al., 2012), and guts of animal (Kersters et al., 2006; Williams et al., 2010). The class Gammaproteobacteria contains photosynthetic purple sulfur bacteria (Chromatiales) together with a great number of familiar chemoheterotrophic groups, such as En terobacteriales, Legionellales, Pasteurellales, Pseudo monadales, and also some chemolithotrophic sulfur and iron-oxidizing bacteria group (Kersters et al., 2006). Based on the branching pattern in the 16S rRNA gene trees, the class Gammaproteobacteria has been currently divided into 16 main orders (Parte, 2014): Aeromonad ales, Alteromonadales, Arenicellales, Cardiobacteriales, Chromatiales, Enterobacteriales, Legionellales, Methy lococcales, Oceanospirillales, Orbales, Pasteurellales, Pseudomonadales, Salinisphaerales, Thiotrichales, Vib rionales, Xanthomonadales (Garrity et al., 2005; Kersters et al., 2006; Williams et al., 2010). As a part of the research program of ‘The survey of Korean indigenous species’, during 2014 we collected diverse environmental samples including ginseng field Journal of Species Research 5(2):241-253, 2016","PeriodicalId":426231,"journal":{"name":"Journal of species research","volume":"41 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2016-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria\",\"authors\":\"Yeonjung Lim, Yochan Joung, Gi Gyun Nam, K. Jahng, S. Kim, K. Joh, C. Cha, C. Seong, J. Bae, W. Im, Jang-Cheon Cho\",\"doi\":\"10.12651/JSR.2016.5.2.241\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The class Gammaproteobacteria forms the largest phylogenetic group (at least 180 genera and over 750 species) in the phylum Proteobacteia and members of the class show diverse metabolic pathways and phenotypes (Garrity et al., 2005; Kersters et al., 2006; Williams et al., 2010). In general, all organisms in this class are unicellular and mostly rods, and are abundant in various freshwater habitats (Kim et al., 2012a; Zhang et al., 2014; Keller-Costa et al., 2014), seawater habitats (Giovannoni et al., 1990; Cho and Giovannoni, 2004; Du et al., 2009; Yan et al., 2011; Wang et al., 2012), and guts of animal (Kersters et al., 2006; Williams et al., 2010). The class Gammaproteobacteria contains photosynthetic purple sulfur bacteria (Chromatiales) together with a great number of familiar chemoheterotrophic groups, such as En terobacteriales, Legionellales, Pasteurellales, Pseudo monadales, and also some chemolithotrophic sulfur and iron-oxidizing bacteria group (Kersters et al., 2006). Based on the branching pattern in the 16S rRNA gene trees, the class Gammaproteobacteria has been currently divided into 16 main orders (Parte, 2014): Aeromonad ales, Alteromonadales, Arenicellales, Cardiobacteriales, Chromatiales, Enterobacteriales, Legionellales, Methy lococcales, Oceanospirillales, Orbales, Pasteurellales, Pseudomonadales, Salinisphaerales, Thiotrichales, Vib rionales, Xanthomonadales (Garrity et al., 2005; Kersters et al., 2006; Williams et al., 2010). As a part of the research program of ‘The survey of Korean indigenous species’, during 2014 we collected diverse environmental samples including ginseng field Journal of Species Research 5(2):241-253, 2016\",\"PeriodicalId\":426231,\"journal\":{\"name\":\"Journal of species research\",\"volume\":\"41 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2016-06-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of species research\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.12651/JSR.2016.5.2.241\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of species research","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.12651/JSR.2016.5.2.241","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1
摘要
γ变形菌纲是变形菌门中最大的系统发育类群(至少有180属,超过750种),其成员表现出不同的代谢途径和表型(Garrity et al., 2005;Kersters et al., 2006;Williams et al., 2010)。一般来说,这一类生物都是单细胞的,大多数是杆状生物,在各种淡水栖息地中都很丰富(Kim et al., 2012a;Zhang et al., 2014;Keller-Costa等人,2014),海水生境(Giovannoni等人,1990;Cho and Giovannoni, 2004;Du et al., 2009;Yan et al., 2011;Wang et al., 2012)和动物内脏(Kersters et al., 2006;Williams et al., 2010)。Gammaproteobacteria类包括光合紫硫细菌(Chromatiales)以及大量熟悉的化学异养菌群,如En - terobacteriales、Legionellales、Pasteurellales、Pseudo - monadales,以及一些化学异养硫和铁氧化菌群(Kersters et al., 2006)。根据16S rRNA基因树的分支模式,Gammaproteobacteria类目前被分为16个主要目(partte, 2014): Aeromonad - ales, Alteromonadales, Arenicellales, Cardiobacteriales, Chromatiales, Enterobacteriales, Legionellales, Methy - loccoccales, Oceanospirillales, Orbales, pasteurelales, Pseudomonadales, Salinisphaerales, Thiotrichales, Vib - rionales, Xanthomonadales (Garrity等,2005);Kersters et al., 2006;Williams et al., 2010)。作为“韩国本土物种调查”研究项目的一部分,我们在2014年收集了包括人参在内的多种环境样本。物种研究杂志5(2):241-253,2016
A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
The class Gammaproteobacteria forms the largest phylogenetic group (at least 180 genera and over 750 species) in the phylum Proteobacteia and members of the class show diverse metabolic pathways and phenotypes (Garrity et al., 2005; Kersters et al., 2006; Williams et al., 2010). In general, all organisms in this class are unicellular and mostly rods, and are abundant in various freshwater habitats (Kim et al., 2012a; Zhang et al., 2014; Keller-Costa et al., 2014), seawater habitats (Giovannoni et al., 1990; Cho and Giovannoni, 2004; Du et al., 2009; Yan et al., 2011; Wang et al., 2012), and guts of animal (Kersters et al., 2006; Williams et al., 2010). The class Gammaproteobacteria contains photosynthetic purple sulfur bacteria (Chromatiales) together with a great number of familiar chemoheterotrophic groups, such as En terobacteriales, Legionellales, Pasteurellales, Pseudo monadales, and also some chemolithotrophic sulfur and iron-oxidizing bacteria group (Kersters et al., 2006). Based on the branching pattern in the 16S rRNA gene trees, the class Gammaproteobacteria has been currently divided into 16 main orders (Parte, 2014): Aeromonad ales, Alteromonadales, Arenicellales, Cardiobacteriales, Chromatiales, Enterobacteriales, Legionellales, Methy lococcales, Oceanospirillales, Orbales, Pasteurellales, Pseudomonadales, Salinisphaerales, Thiotrichales, Vib rionales, Xanthomonadales (Garrity et al., 2005; Kersters et al., 2006; Williams et al., 2010). As a part of the research program of ‘The survey of Korean indigenous species’, during 2014 we collected diverse environmental samples including ginseng field Journal of Species Research 5(2):241-253, 2016