mpi互操作活动消息的优化策略

Xin Zhao, P. Balaji, W. Gropp, R. Thakur
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引用次数: 1

摘要

数据密集型应用,如生物信息学和社会网络分析中的应用,不同于传统的科学应用,因为它们通常涉及数据驱动和不规则的计算/通信模式,使它们不适合传统的数据移动方法。活动消息(Active Messages, AM)是一种可选的编程模型,它允许动态地将计算移动到离数据更近的地方,而不是将数据移动到本地进程。在我们之前的工作中,我们提出了一个MPI互操作的AM框架,该框架允许现有的MPI应用程序逐步利用AM功能。虽然这项工作提供了AMs如何在语义上与MPI基础设施的其余部分交互的基线实现,但它有几个性能缺点。在本文中,我们分析了这些性能缺陷,并提出了三种优化策略:一种是由MPI实现隐式导出的,另两种是由应用程序用户明确暗示的。除了对这些优化策略的详细描述之外,本文还对4096核集群进行了全面的性能评估,证明了这些策略具有相当大的性能优势。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Optimization Strategies for MPI-Interoperable Active Messages
Data-intensive applications, such as those in bioinformatics and social network analysis, differ from traditional scientific applications in that they often involve data-driven and irregular computation/communication patterns, making them ill-suited for traditional data movement approaches. Active Messages (AM) is an alternative programming model that allows dynamically moving computation closer to data, rather than moving the data to the local process. In our previous work, we proposed an MPI-interoperable AM framework that allows existing MPI applications to incrementally take advantage of AM capabilities. While that work presented a baseline implementation of how AMs semantically interact with the rest of the MPI infrastructure, it had several performance shortcomings. In this paper, we analyze these performance shortcomings and propose three optimization strategies: one implicitly derived by the MPI implementation and two explicitly hinted to by the application user. In addition to the detailed description of these optimization strategies, the paper presents a thorough performance evaluation on a 4096-core cluster that demonstrates considerable performance advantages from these strategies.
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