一个比较化学计量模型的软件工具

2012 7th IEEE International Symposium on Applied Computational Intelligence and Informatics (SACI) Pub Date : 2012-05-24 DOI:10.1109/SACI.2012.6249983

M. Mednis, Zintis Rove, V. Galvanauskas

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引用次数: 8

摘要

ModeRator是一个在线软件工具，用于比较以cobra兼容格式编写的化学计量模型。它的主要目的是检测复杂模型的不一致性，并在计算机上没有安装Matlab和COBRA工具箱的情况下对模型进行比较。该工具可以在http://biosystems.lv/moderator/上在线使用，也可以托管在本地计算机上。ModeRator是用纯PHP实现的，其源代码可以从http://sourceforge.net下载。应用程序和安装说明是可用的。此外，youtube上还有一个视频教程。在两个具有代表性的移动单胞菌基因组尺度代谢网络模型上对ModeRator进行了测试。结果表明，所提出的软件工具能够正确地分析/比较模型。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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ModeRator - a software tool for comparison of stoichiometric models

ModeRator is an online software tool for comparison of stoichiometric models written in COBRA-compatible format. Its main purpose is to detect the inconsistencies of complex models and to compare the models even without having Matlab and COBRA toolbox installed on a computer. The tool can be used online at http://biosystems.lv/moderator/ or hosted on a local computer. ModeRator is implemented in pure PHP, and its source code can be downloaded from http://sourceforge.net. The application and installation instructions are available. Additionally, a video tutorial is available on Youlube. ModeRator was tested on two representative genome-scale metabolic network models of Zymomonas Mobilis. The results show that the proposed software tool is able to correctly analyse/compare the models.

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2012 7th IEEE International Symposium on Applied Computational Intelligence and Informatics (SACI)

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