用化学朗格万-列维方程模拟酶促反应

M. Altınkaya, E. Kuruoğlu
{"title":"用化学朗格万-列维方程模拟酶促反应","authors":"M. Altınkaya, E. Kuruoğlu","doi":"10.1109/SIU.2012.6204746","DOIUrl":null,"url":null,"abstract":"Chemical Langevin Equation (CLE) describes a useful approximation in stochastic modeling of chemical reactions. CLE-based τ-leaping algorithm updates the quantities of every molecule in a reaction system with a period of τ, firing every reaction in the system so many times that the concentration of each molecule can be assumed to remain in the current concentration state. Substituting the Brownian motion in the CLE with a Levy flight, one might expect the CLE to converge more rapidly. This work shows that alpha (Levy)-stable increments can be used in τ-leaping, demonstrating it with the example of a detailed kinetic model describing the enzymatic transgalactosylation reaction during lactulose hydrolysis.","PeriodicalId":256154,"journal":{"name":"2012 20th Signal Processing and Communications Applications Conference (SIU)","volume":"31 10 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2012-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Modeling enzymatic reactions via chemical Langevin-Levy equation\",\"authors\":\"M. Altınkaya, E. Kuruoğlu\",\"doi\":\"10.1109/SIU.2012.6204746\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Chemical Langevin Equation (CLE) describes a useful approximation in stochastic modeling of chemical reactions. CLE-based τ-leaping algorithm updates the quantities of every molecule in a reaction system with a period of τ, firing every reaction in the system so many times that the concentration of each molecule can be assumed to remain in the current concentration state. Substituting the Brownian motion in the CLE with a Levy flight, one might expect the CLE to converge more rapidly. This work shows that alpha (Levy)-stable increments can be used in τ-leaping, demonstrating it with the example of a detailed kinetic model describing the enzymatic transgalactosylation reaction during lactulose hydrolysis.\",\"PeriodicalId\":256154,\"journal\":{\"name\":\"2012 20th Signal Processing and Communications Applications Conference (SIU)\",\"volume\":\"31 10 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2012-04-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2012 20th Signal Processing and Communications Applications Conference (SIU)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/SIU.2012.6204746\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2012 20th Signal Processing and Communications Applications Conference (SIU)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/SIU.2012.6204746","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

摘要

化学朗之万方程(CLE)描述了化学反应随机模型中一个有用的近似。基于cle的τ跳跃算法以周期τ更新反应系统中每个分子的数量,多次触发系统中的每个反应,从而可以假设每个分子的浓度保持在当前浓度状态。用列维飞行代替CLE中的布朗运动,人们可能期望CLE收敛得更快。这项工作表明,α (Levy)稳定增量可以用于τ跳跃,并以描述乳果糖水解过程中酶转半乳糖基化反应的详细动力学模型为例进行了证明。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Modeling enzymatic reactions via chemical Langevin-Levy equation
Chemical Langevin Equation (CLE) describes a useful approximation in stochastic modeling of chemical reactions. CLE-based τ-leaping algorithm updates the quantities of every molecule in a reaction system with a period of τ, firing every reaction in the system so many times that the concentration of each molecule can be assumed to remain in the current concentration state. Substituting the Brownian motion in the CLE with a Levy flight, one might expect the CLE to converge more rapidly. This work shows that alpha (Levy)-stable increments can be used in τ-leaping, demonstrating it with the example of a detailed kinetic model describing the enzymatic transgalactosylation reaction during lactulose hydrolysis.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信