结合临床和分子特征的机器学习预测肺癌患者的生存

Syed Abdullah Basit, R. Qureshi, A. Shahid, Sheheryar Khan
{"title":"结合临床和分子特征的机器学习预测肺癌患者的生存","authors":"Syed Abdullah Basit, R. Qureshi, A. Shahid, Sheheryar Khan","doi":"10.36227/TECHRXIV.12943469.V1","DOIUrl":null,"url":null,"abstract":"Among all kinds of cancer, lung cancer has the greatest fatality rate. The mutation in Epidermal growth factor receptor (EGFR) is a significant cause of cancer deaths. Lung cancer is often diagnosed at advanced cancer stages. In this work, we propose a model by integrating patient's personal information and molecular features using machine learning classifiers, and molecular dynamics simulation. The clinical information is taken from various published studies, and molecular features are extracted using the drug-protein interactions and binding free energy of the drug-protein complex. The proposed model achieves good accuracy with a random forest classifier and a deep neural network. We believe that the prediction can be a promising index, and may help physicians and oncologists to develop personalized therapies for lung cancer patients.","PeriodicalId":325357,"journal":{"name":"2021 15th International Conference on Open Source Systems and Technologies (ICOSST)","volume":"1 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2020-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Survival prediction of lung cancer patients by integration of clinical and molecular features using machine learning\",\"authors\":\"Syed Abdullah Basit, R. Qureshi, A. Shahid, Sheheryar Khan\",\"doi\":\"10.36227/TECHRXIV.12943469.V1\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Among all kinds of cancer, lung cancer has the greatest fatality rate. The mutation in Epidermal growth factor receptor (EGFR) is a significant cause of cancer deaths. Lung cancer is often diagnosed at advanced cancer stages. In this work, we propose a model by integrating patient's personal information and molecular features using machine learning classifiers, and molecular dynamics simulation. The clinical information is taken from various published studies, and molecular features are extracted using the drug-protein interactions and binding free energy of the drug-protein complex. The proposed model achieves good accuracy with a random forest classifier and a deep neural network. We believe that the prediction can be a promising index, and may help physicians and oncologists to develop personalized therapies for lung cancer patients.\",\"PeriodicalId\":325357,\"journal\":{\"name\":\"2021 15th International Conference on Open Source Systems and Technologies (ICOSST)\",\"volume\":\"1 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-09-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2021 15th International Conference on Open Source Systems and Technologies (ICOSST)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.36227/TECHRXIV.12943469.V1\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2021 15th International Conference on Open Source Systems and Technologies (ICOSST)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.36227/TECHRXIV.12943469.V1","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

摘要

在各种癌症中,肺癌的致死率最高。表皮生长因子受体(EGFR)的突变是癌症死亡的重要原因。肺癌通常在癌症晚期才被诊断出来。在这项工作中,我们提出了一个通过机器学习分类器和分子动力学模拟整合患者个人信息和分子特征的模型。临床信息取自各种已发表的研究,并利用药物-蛋白质相互作用和药物-蛋白质复合物的结合自由能提取分子特征。该模型采用随机森林分类器和深度神经网络实现了较好的准确率。我们相信这一预测可以成为一个有希望的指标,并可能帮助医生和肿瘤学家为肺癌患者开发个性化的治疗方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Survival prediction of lung cancer patients by integration of clinical and molecular features using machine learning
Among all kinds of cancer, lung cancer has the greatest fatality rate. The mutation in Epidermal growth factor receptor (EGFR) is a significant cause of cancer deaths. Lung cancer is often diagnosed at advanced cancer stages. In this work, we propose a model by integrating patient's personal information and molecular features using machine learning classifiers, and molecular dynamics simulation. The clinical information is taken from various published studies, and molecular features are extracted using the drug-protein interactions and binding free energy of the drug-protein complex. The proposed model achieves good accuracy with a random forest classifier and a deep neural network. We believe that the prediction can be a promising index, and may help physicians and oncologists to develop personalized therapies for lung cancer patients.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信