UltraScan科学网关的改进,使计算工作能够在大规模和基于开放标准的网络基础设施上进行

M. S. Memon, N. Attig, Gary Gorbet, Lahiru Gunathilake, M. Riedel, T. Lippert, S. Marru, A. Grimshaw, F. Janetzko, B. Demeler, Raminderjeet Singh
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引用次数: 6

摘要

UltraScan数据分析应用程序是一个软件包,能够利用计算资源来支持分析性超离心(AUC)实验的解释。自2006年以来,UltraScan科学网关已与TeraGrid中的普通Web浏览器一起使用,供科学家研究生物和合成分子的溶液特性。与其他应用程序不同,UltraScan是在网关架构上实现的,并利用超级计算的能力从实验数据中提取非常高分辨率的信息。在本文中,我们将重点介绍UltraScan科学网关的几项改进,这些改进可以实现标准化的作业提交和计算资源管理,同时保留其轻量级设计,以免干扰最终用户的既定工作流程。本文进一步介绍了建筑设计的演练,包括UltraScan在欧洲的一次实际安装部署。其目的是为开放标准的附加价值和由此产生的互操作性提供证据,使UltraScan应用程序不仅可以提交到美国网络基础设施极端科学与工程发现环境(XSEDE)中提供的资源,还可以提交到欧洲和世界各地的类似基础设施中。在我们的方法中使用Apache Airavata框架作为科学网关,也有可能对其他几个科学网关产生影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Improvements of the UltraScan scientific gateway to enable computational jobs on large-scale and open-standards based cyberinfrastructures
The UltraScan data analysis application is a software package that is able to take advantage of computational resources in order to support the interpretation of analytical ultracentrifugation (AUC) experiments. Since 2006, the UltraScan scientific gateway has been used with ordinary Web browsers in TeraGrid by scientists studying the solution properties of biological and synthetic molecules. Unlike other applications, UltraScan is implemented on a gateway architecture and leverages the power of supercomputing to extract very high resolution information from the experimental data. In this contribution, we will focus on several improvements of the UltraScan scientific gateway that enable a standardized job submission and management to computational resources while retaining its lightweight design in order to not disturb the established workflows of its end-users. This paper further presents a walkthrough of the architectural design including one real installation deployment of UltraScan in Europe. The aim is to provide evidence for the added value of open standards and resulting interoperability enabling not only UltraScan application submissions to resources offered in the US cyber infrastructure Extreme Science and Engineering Discovery Environment (XSEDE), but also submissions to similar infrastructures in Europe and around the world. The use of the Apache Airavata framework for scientific gateways within our approach bears the potential to have an impact on several other scientific gateways too.
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