高性能的反向建模与反向蒙特卡罗模拟

Abhinav Sarje, X. Li, A. Hexemer
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引用次数: 4

摘要

在纳米粒子材料科学领域,基于微观和纳米尺度的结构特性,x射线散射技术被广泛用于表征大分子和粒子系统(有序、部分有序或定制)。许多应用都利用这些,包括与能源相关的纳米器件的设计和制造,如光伏和储能器件。由于其尺寸,通过现有的超快光束线和x射线散射探测器获得的原始数据的分析一直是这种表征过程的主要瓶颈。为了解决这一障碍,我们正在开发高性能并行算法和代码,用于几种散射方法的x射线散射数据分析,例如我们在本文中讨论的小角度x射线散射(SAXS)。对SAXS实验获得的原始数据进行结构拟合是一种反演建模问题,是提取材料结构特性有意义信息的一种方法。这种拟合过程涉及大量的可变参数,因此需要大量的计算能力。在本文中,我们关注这个问题,并提出了一个基于反向蒙特卡罗模拟算法的高性能和可扩展的并行解决方案,用于多核cpu和图形处理器集群等高度并行系统。我们已经在通用的多核cpu上实现并优化了我们的算法,以及使用c++和CUDA的Nvidia GPU架构。我们还提供了详细的性能结果和代码的计算分析。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
High-Performance Inverse Modeling with Reverse Monte Carlo Simulations
In the field of nanoparticle material science, X-ray scattering techniques are widely used for characterization of macromolecules and particle systems (ordered, partially-ordered or custom) based on their structural properties at the micro- and nano-scales. Numerous applications utilize these, including design and fabrication of energy-relevant nanodevices such as photovoltaic and energy storage devices. Due to its size, analysis of raw data obtained through present ultra-fast light beamlines and X-ray scattering detectors has been a primary bottleneck in such characterization processes. To address this hurdle, we are developing high-performance parallel algorithms and codes for analysis of X-ray scattering data for several of the scattering methods, such as the Small Angle X-ray Scattering (SAXS), which we talk about in this paper. As an inverse modeling problem, structural fitting of the raw data obtained through SAXS experiments is a method used for extracting meaningful information on the structural properties of materials. Such fitting processes involve a large number of variable parameters and, hence, require a large amount of computational power. In this paper, we focus on this problem and present a high-performance and scalable parallel solution based on the Reverse Monte Carlo simulation algorithm, on highly-parallel systems such as clusters of multicore CPUs and graphics processors. We have implemented and optimized our algorithm on generic multi-core CPUs as well as the Nvidia GPU architectures with C++ and CUDA. We also present detailed performance results and computational analysis of our code.
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