neuGrid中神经成像工作流的来源管理

A. Anjum, N. Bessis, Richard Hill, R. McClatchey, I. Habib, K. Soomro, P. Bloodsworth, A. Branson
{"title":"neuGrid中神经成像工作流的来源管理","authors":"A. Anjum, N. Bessis, Richard Hill, R. McClatchey, I. Habib, K. Soomro, P. Bloodsworth, A. Branson","doi":"10.1109/3PGCIC.2011.20","DOIUrl":null,"url":null,"abstract":"An increased amount of large scale, collaborative biomedical research has recently been conducted on e-Science infrastructures. Such research typically involves conducting comparative analysis on large amounts of data to search for biomarkers for diseases. Running these analysis manually can often be quite cumbersome, labour-intensive and error-prone. Significant work has been invested into automating such analysis with appropriately configured workflows. It is also important for biomedical researchers to validate analysis outcomes, to ensure the reproducibility of the results and to ascertain the ownership of specific scientific results. The detailed, traceable information required for this is often referred to as provenance data. Developing suitable methods and approaches to managing provenance data in large-scale distributed e-Science environments is another important area of research currently being investigated. We present an approach that has been adopted in the neu GRID project, which aims to develop an infrastructure to facilitate research into neurodegenerative disease studies such as Alzheimer's. To facilitate the automation of complex, large-scale analysis in neu GRID, we have adapted CRISTAL, a workflow and provenance tracking solution. The use of CRISTAL has provided a rich environment for neuroscientists to track and manage the evolution of both data and workflows in the neu GRID infrastructure.","PeriodicalId":251730,"journal":{"name":"2011 International Conference on P2P, Parallel, Grid, Cloud and Internet Computing","volume":"21 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2011-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"5","resultStr":"{\"title\":\"Provenance Management for Neuroimaging Workflows in neuGrid\",\"authors\":\"A. Anjum, N. Bessis, Richard Hill, R. McClatchey, I. Habib, K. Soomro, P. Bloodsworth, A. Branson\",\"doi\":\"10.1109/3PGCIC.2011.20\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"An increased amount of large scale, collaborative biomedical research has recently been conducted on e-Science infrastructures. Such research typically involves conducting comparative analysis on large amounts of data to search for biomarkers for diseases. Running these analysis manually can often be quite cumbersome, labour-intensive and error-prone. Significant work has been invested into automating such analysis with appropriately configured workflows. It is also important for biomedical researchers to validate analysis outcomes, to ensure the reproducibility of the results and to ascertain the ownership of specific scientific results. The detailed, traceable information required for this is often referred to as provenance data. Developing suitable methods and approaches to managing provenance data in large-scale distributed e-Science environments is another important area of research currently being investigated. We present an approach that has been adopted in the neu GRID project, which aims to develop an infrastructure to facilitate research into neurodegenerative disease studies such as Alzheimer's. To facilitate the automation of complex, large-scale analysis in neu GRID, we have adapted CRISTAL, a workflow and provenance tracking solution. The use of CRISTAL has provided a rich environment for neuroscientists to track and manage the evolution of both data and workflows in the neu GRID infrastructure.\",\"PeriodicalId\":251730,\"journal\":{\"name\":\"2011 International Conference on P2P, Parallel, Grid, Cloud and Internet Computing\",\"volume\":\"21 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2011-10-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"5\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2011 International Conference on P2P, Parallel, Grid, Cloud and Internet Computing\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/3PGCIC.2011.20\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2011 International Conference on P2P, Parallel, Grid, Cloud and Internet Computing","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/3PGCIC.2011.20","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 5

摘要

最近,在电子科学基础设施上开展了越来越多的大规模生物医学合作研究。这类研究通常涉及对大量数据进行比较分析,以寻找疾病的生物标志物。手动运行这些分析通常是相当麻烦的,劳动密集型的并且容易出错。大量的工作已经投入到使用适当配置的工作流自动化这种分析中。对生物医学研究人员来说,验证分析结果、确保结果的可重复性和确定特定科学结果的所有权也很重要。为此所需的详细的、可追溯的信息通常被称为来源数据。开发合适的方法和途径来管理大规模分布式电子科学环境中的来源数据是目前正在调查的另一个重要研究领域。我们提出了一种在新的GRID项目中采用的方法,该项目旨在开发一种基础设施,以促进对阿尔茨海默氏症等神经退行性疾病的研究。为了便于在新的GRID中进行复杂的大规模分析的自动化,我们采用了CRISTAL,这是一个工作流程和来源跟踪解决方案。CRISTAL的使用为神经科学家提供了一个丰富的环境来跟踪和管理新的GRID基础设施中数据和工作流程的演变。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Provenance Management for Neuroimaging Workflows in neuGrid
An increased amount of large scale, collaborative biomedical research has recently been conducted on e-Science infrastructures. Such research typically involves conducting comparative analysis on large amounts of data to search for biomarkers for diseases. Running these analysis manually can often be quite cumbersome, labour-intensive and error-prone. Significant work has been invested into automating such analysis with appropriately configured workflows. It is also important for biomedical researchers to validate analysis outcomes, to ensure the reproducibility of the results and to ascertain the ownership of specific scientific results. The detailed, traceable information required for this is often referred to as provenance data. Developing suitable methods and approaches to managing provenance data in large-scale distributed e-Science environments is another important area of research currently being investigated. We present an approach that has been adopted in the neu GRID project, which aims to develop an infrastructure to facilitate research into neurodegenerative disease studies such as Alzheimer's. To facilitate the automation of complex, large-scale analysis in neu GRID, we have adapted CRISTAL, a workflow and provenance tracking solution. The use of CRISTAL has provided a rich environment for neuroscientists to track and manage the evolution of both data and workflows in the neu GRID infrastructure.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信