Srividya Iyer-Biswas, Herman Gudjonson, Charles S. Wright, Jedidiah Riebling, Emma R. Dawson, Klevin Lo, Aretha Fiebig, S. Crosson, A. Dinner
{"title":"弥合单细胞和种群动态的时间尺度","authors":"Srividya Iyer-Biswas, Herman Gudjonson, Charles S. Wright, Jedidiah Riebling, Emma R. Dawson, Klevin Lo, Aretha Fiebig, S. Crosson, A. Dinner","doi":"10.1103/PhysRevX.8.021007","DOIUrl":null,"url":null,"abstract":"How are granular details of stochastic growth and division of individual cells reflected in smooth deterministic growth of population numbers? We provide an integrated, multiscale perspective of microbial growth dynamics by formulating a data-validated theoretical framework that accounts for observables at both single-cell and population scales. We derive exact analytical complete time-dependent solutions to cell-age distributions and population growth rates as functionals of the underlying interdivision time distributions, for symmetric and asymmetric cell division. These results provide insights into the surprising implications of stochastic single-cell dynamics for population growth. Using our results for asymmetric division, we deduce the time to transition from the reproductively quiescent (swarmer) to replication-competent (stalked) stage of the {\\em Caulobacter crescentus} lifecycle. Remarkably, population numbers can spontaneously oscillate with time. We elucidate the physics leading to these population oscillations. For {\\em C. crescentus} cells, we show that a simple measurement of the population growth rate, for a given growth condition, is sufficient to characterize the condition-specific cellular unit of time, and thus yields the mean (single-cell) growth and division timescales, fluctuations in cell division times, the cell age distribution, and the quiescence timescale.","PeriodicalId":119149,"journal":{"name":"arXiv: Quantitative Methods","volume":"4 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2016-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"19","resultStr":"{\"title\":\"Bridging the time scales of single-cell and population dynamics\",\"authors\":\"Srividya Iyer-Biswas, Herman Gudjonson, Charles S. Wright, Jedidiah Riebling, Emma R. Dawson, Klevin Lo, Aretha Fiebig, S. Crosson, A. Dinner\",\"doi\":\"10.1103/PhysRevX.8.021007\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"How are granular details of stochastic growth and division of individual cells reflected in smooth deterministic growth of population numbers? We provide an integrated, multiscale perspective of microbial growth dynamics by formulating a data-validated theoretical framework that accounts for observables at both single-cell and population scales. We derive exact analytical complete time-dependent solutions to cell-age distributions and population growth rates as functionals of the underlying interdivision time distributions, for symmetric and asymmetric cell division. These results provide insights into the surprising implications of stochastic single-cell dynamics for population growth. Using our results for asymmetric division, we deduce the time to transition from the reproductively quiescent (swarmer) to replication-competent (stalked) stage of the {\\\\em Caulobacter crescentus} lifecycle. Remarkably, population numbers can spontaneously oscillate with time. We elucidate the physics leading to these population oscillations. For {\\\\em C. crescentus} cells, we show that a simple measurement of the population growth rate, for a given growth condition, is sufficient to characterize the condition-specific cellular unit of time, and thus yields the mean (single-cell) growth and division timescales, fluctuations in cell division times, the cell age distribution, and the quiescence timescale.\",\"PeriodicalId\":119149,\"journal\":{\"name\":\"arXiv: Quantitative Methods\",\"volume\":\"4 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2016-11-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"19\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv: Quantitative Methods\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1103/PhysRevX.8.021007\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv: Quantitative Methods","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1103/PhysRevX.8.021007","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 19
摘要
单个细胞的随机生长和分裂的颗粒细节如何反映在种群数量的平滑确定性增长中?我们通过制定一个数据验证的理论框架来解释单细胞和种群尺度上的观察结果,提供了一个集成的、多尺度的微生物生长动力学视角。对于对称和非对称细胞分裂,我们推导出细胞年龄分布和人口增长率作为潜在分裂时间分布的函数的精确解析完整的时间依赖解。这些结果为随机单细胞动力学对种群增长的惊人影响提供了见解。利用我们对不对称分裂的结果,我们推断了{\em Caulobacter crescent}生命周期从繁殖静止(群集)到繁殖能力(跟踪)阶段的过渡时间。值得注意的是,种群数量可以随时间自发地振荡。我们阐明了导致这些种群振荡的物理原理。对于{\em C. crescentus}细胞,我们表明,在给定的生长条件下,对种群增长率的简单测量足以表征特定条件的细胞时间单位,从而产生平均(单细胞)生长和分裂时间尺度,细胞分裂时间的波动,细胞年龄分布和静止时间尺度。
Bridging the time scales of single-cell and population dynamics
How are granular details of stochastic growth and division of individual cells reflected in smooth deterministic growth of population numbers? We provide an integrated, multiscale perspective of microbial growth dynamics by formulating a data-validated theoretical framework that accounts for observables at both single-cell and population scales. We derive exact analytical complete time-dependent solutions to cell-age distributions and population growth rates as functionals of the underlying interdivision time distributions, for symmetric and asymmetric cell division. These results provide insights into the surprising implications of stochastic single-cell dynamics for population growth. Using our results for asymmetric division, we deduce the time to transition from the reproductively quiescent (swarmer) to replication-competent (stalked) stage of the {\em Caulobacter crescentus} lifecycle. Remarkably, population numbers can spontaneously oscillate with time. We elucidate the physics leading to these population oscillations. For {\em C. crescentus} cells, we show that a simple measurement of the population growth rate, for a given growth condition, is sufficient to characterize the condition-specific cellular unit of time, and thus yields the mean (single-cell) growth and division timescales, fluctuations in cell division times, the cell age distribution, and the quiescence timescale.