利用紧急计算解决蚊媒疾病的传播

Nick Brown, R. Nash, P. Poletti, G. Guzzetta, M. Manica, A. Zardini, M. Flatken, Jules Vidal, Charles Gueunet, E. Belikov, Julien Tierny, Artur Podobas, W. Chien, S. Markidis, A. Gerndt
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引用次数: 7

摘要

据估计,世界上约80%的人口生活在易受至少一种主要病媒传播疾病影响的地区,全球约20%的传染病是由蚊子传播的。此外,这类疾病的爆发正变得越来越普遍和广泛,其中大部分是近年来社会人口和气候因素造成的。这些趋势引起了包括美国疾病控制与预防中心(CDC)和世界卫生组织(WHO)在内的全球卫生组织的极大担忧,因此一个重要的问题是,技术在解决这些问题方面可以发挥什么作用。在这项工作中,我们描述了模拟蚊媒疾病传播的流行病学模型与VESTEC紧急计算生态系统的集成。这项工作的目的是使人类卫生专业人员能够利用这一模型,更容易地探索蚊子传播疾病的进展。传统上,在少数研究科学家的领域,通过利用最先进的可视化和分析技术,所有这些技术都通过在HPC机器上以无缝方式运行计算工作负载来支持,我们展示了这种集成可以提供的显著优势。此外,我们还展示了使用VESTEC等生态系统的好处,它为紧急计算提供了一个框架,支持流行病学家和灾害应对专业人员更广泛地采用这些技术。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Utilising urgent computing to tackle the spread of mosquito-borne diseases
It is estimated that around 80% of the world’s population live in areas susceptible to at-least one major vector borne disease, and approximately 20% of global communicable diseases are spread by mosquitoes. Furthermore, the outbreaks of such diseases are becoming more common and widespread, with much of this driven in recent years by socio-demographic and climatic factors. These trends are causing significant worry to global health organisations, including the CDC and WHO, and-so an important question is the role that technology can play in addressing them. In this work we describe the integration of an epidemiology model, which simulates the spread of mosquito-borne diseases, with the VESTEC urgent computing ecosystem. The intention of this work is to empower human health professionals to exploit this model and more easily explore the progression of mosquito-borne diseases. Traditionally in the domain of the few research scientists, by leveraging state of the art visualisation and analytics techniques, all supported by running the computational workloads on HPC machines in a seamless fashion, we demonstrate the significant advantages that such an integration can provide. Furthermore we demonstrate the benefits of using an ecosystem such as VESTEC, which provides a framework for urgent computing, in supporting the easy adoption of these technologies by the epidemiologists and disaster response professionals more widely.
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