张量多任务学习预测阿尔茨海默病进展使用MRI数据与时空相似性测量

Yu Zhang, Po-Sung Yang, V. Lanfranchi
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引用次数: 8

摘要

阿尔茨海默病(AD)是一种典型的进行性神经退行性疾病,发病隐匿。利用各种生物标志物来跟踪和预测阿尔茨海默病的进展以支持临床决策最近受到了广泛的关注。准确预测疾病进展将有助于临床医生和患者做出疾病预防和治疗的最佳决策。典型的预测模型侧重于从磁共振成像(MRI)或正电子发射断层扫描(PET)中提取不同感兴趣区域(roi)的生物标志物形态学信息,如平均区域皮质厚度和区域体积。它们在模拟AD进展和理解AD生物标志物方面是有效的,但不能充分利用这些生物标志物之间的内部时空关系来提高AD预测的准确性和稳定性。在本文中,我们提出了一种新的基于脑生物标志物间时空相似性度量组成的张量的多任务学习(MTL)方法,利用MRI数据和不同阶段AD患者的认知评分可以有效预测AD的进展。具体而言,我们定义一个时空特征相似性测度,计算每个生物标志物在MRI中的变化速率和速度,形成一个向量,表示生物标志物的形态变化趋势,然后计算两个生物标志物之间变化趋势的相似性,并将数据编码为三阶张量,从原始数据中提取可解释的生物标志物潜在因素。对张量中每个患者样本的预测是一个任务,所有的预测任务共享一组由张量分解得到的潜在因素来训练AD进展预测模型,该模型从时空张量本身学习任务相关性。我们利用阿尔茨海默病神经影像学倡议(ADNI)的数据进行了广泛的实验。实验结果表明,与基于roi的传统单特征回归方法相比,我们提出的方法在疾病进展预测方面具有更好的准确性和稳定性,其均方根误差在迷你精神状态检查(MMSE)问卷中比Ridge回归平均降低4.10,比Lasso回归平均降低0.19,比颞叶组Lasso (TGL)平均降低0.18。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Tensor Multi-Task Learning for Predicting Alzheimer’s Disease Progression using MRI data with Spatio-temporal Similarity Measurement
Alzheimer's disease (AD) is a typical progressive neurodegenerative disease with insidious onset. Utilising various biomarkers to track and predict AD progression for supporting clinic decisions has recently received wide attentions. Accurate prediction of disease progression will help clinicians and patients make the best decisions on disease prevention and treatment. Typical prediction models focus on extracting biomarker morphological information of different regions of interest (ROIs) from magnetic resonance imaging (MRI) or positron emission tomography (PET), such as the average regional cortical thickness and regional volume. They are effective in modeling AD progression and understanding AD biomarkers, but cannot make full utilise of the internal temporal and spatial relationships between these biomarkers to improve the accuracy and stability of AD prediction. In this paper, we propose a new multi-task learning (MTL) method based on the tensor composed of the spatio-temporal similarity measure between brain biomarkers, using MRI data and cognitive scores of AD patients in different stages can effectively predict the progression of AD. Specifically, we define a temporal and spatial feature similarity measure to calculate the rate of change and velocity of each biomarker in MRI to form a vector, which represents the morphological changing trend of the biomarker, then we calculate the similarity of the changing trend between two biomarkers and encode the data to the third-order tensor, and extract interpretable biomarker latent factors from the original data. The prediction of each patient sample in the tensor is a task and all prediction tasks share a set of latent factors obtained from tensor decomposition to train the AD progression prediction model, which learns task correlation from the spatiotemporal tensor itself. We conducted extensive experiments utilising the data from the Alzheimer's Disease Neuroimaging Initiative (ADNI). Experimental results show that compared with ROI-based traditional single feature regression methods, our proposed method has better accuracy and stability in disease progression prediction in terms of root mean square error exhibiting an average of 4.10 decrease compared to Ridge regression, 0.19 decrease compared to Lasso regression and 0.18 decrease compared to Temporal Group Lasso (TGL) in the Mini Mental State Examination (MMSE) questionnaire.
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