一种用于终止检测的自适应射线射击模型:在神经元和视网膜血管图像中的应用

Weixun Chen, Min Liu, Ke-Qun Liu, Zhigang Ling
{"title":"一种用于终止检测的自适应射线射击模型:在神经元和视网膜血管图像中的应用","authors":"Weixun Chen, Min Liu, Ke-Qun Liu, Zhigang Ling","doi":"10.1109/BIBM.2018.8621244","DOIUrl":null,"url":null,"abstract":"2D and 3D termination points are very good seeding point choices for the tree-like structure reconstruction in neuron or retinal blood vessel images. Previously, a ray-shooting model was proposed to detect the termination points in fluorescence microscopy images of neurons, by analyzing the pixel intensity distribution of the neighborhood around the neuron termination candidates. However, the length of the shooting rays and the number of z-slices taken into account in the existing ray-shooting model are fixed empirical number. This ray-shooting model cannot handle the diameter variation of neuron branches. In this paper, we propose an adaptive ray-shooting model to detect the terminations of neurons or retinal blood vessels by changing the length of the shooting rays according to their local diameters. The local diameter is estimated by the Multistencils Fast Marching Method (MSFM) in combination with the Rayburst sampling algorithm. We train a support vector machine (SVM) classifier to classify the termination points and non-termination points, by using the pixel intensity distribution features extracted by the adaptive ray-shooting model. Compared with the previous work, the experimental results on multiple neuron datasets and retinal blood vessel datasets show that our method significantly improves the detection accuracy rate by about 10% in challenging datasets.","PeriodicalId":108667,"journal":{"name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","volume":"73 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2018-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"An Adaptive Ray-Shooting Model for Terminations Detection: Applications in Neuron and Retinal Blood Vessel Images\",\"authors\":\"Weixun Chen, Min Liu, Ke-Qun Liu, Zhigang Ling\",\"doi\":\"10.1109/BIBM.2018.8621244\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"2D and 3D termination points are very good seeding point choices for the tree-like structure reconstruction in neuron or retinal blood vessel images. Previously, a ray-shooting model was proposed to detect the termination points in fluorescence microscopy images of neurons, by analyzing the pixel intensity distribution of the neighborhood around the neuron termination candidates. However, the length of the shooting rays and the number of z-slices taken into account in the existing ray-shooting model are fixed empirical number. This ray-shooting model cannot handle the diameter variation of neuron branches. In this paper, we propose an adaptive ray-shooting model to detect the terminations of neurons or retinal blood vessels by changing the length of the shooting rays according to their local diameters. The local diameter is estimated by the Multistencils Fast Marching Method (MSFM) in combination with the Rayburst sampling algorithm. We train a support vector machine (SVM) classifier to classify the termination points and non-termination points, by using the pixel intensity distribution features extracted by the adaptive ray-shooting model. Compared with the previous work, the experimental results on multiple neuron datasets and retinal blood vessel datasets show that our method significantly improves the detection accuracy rate by about 10% in challenging datasets.\",\"PeriodicalId\":108667,\"journal\":{\"name\":\"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)\",\"volume\":\"73 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2018-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/BIBM.2018.8621244\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/BIBM.2018.8621244","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

对于神经元或视网膜血管图像的树状结构重建,二维和三维终止点是很好的播种点选择。先前,提出了一种射线射击模型,通过分析神经元终止候选点周围邻域的像素强度分布来检测神经元荧光显微镜图像中的终止点。而现有的射线射击模型所考虑的射线长度和z片数都是固定的经验数值。这种射线射击模型不能处理神经元分支直径的变化。在本文中,我们提出了一种自适应射线射击模型,通过根据局部直径改变射击射线的长度来检测神经元或视网膜血管的终止。采用多模板快速推进法(MSFM)结合Rayburst采样算法估计局部直径。利用自适应射线射击模型提取的像素强度分布特征,训练支持向量机分类器对终止点和非终止点进行分类。与之前的工作相比,在多神经元数据集和视网膜血管数据集上的实验结果表明,我们的方法在挑战性数据集上的检测准确率显著提高了10%左右。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An Adaptive Ray-Shooting Model for Terminations Detection: Applications in Neuron and Retinal Blood Vessel Images
2D and 3D termination points are very good seeding point choices for the tree-like structure reconstruction in neuron or retinal blood vessel images. Previously, a ray-shooting model was proposed to detect the termination points in fluorescence microscopy images of neurons, by analyzing the pixel intensity distribution of the neighborhood around the neuron termination candidates. However, the length of the shooting rays and the number of z-slices taken into account in the existing ray-shooting model are fixed empirical number. This ray-shooting model cannot handle the diameter variation of neuron branches. In this paper, we propose an adaptive ray-shooting model to detect the terminations of neurons or retinal blood vessels by changing the length of the shooting rays according to their local diameters. The local diameter is estimated by the Multistencils Fast Marching Method (MSFM) in combination with the Rayburst sampling algorithm. We train a support vector machine (SVM) classifier to classify the termination points and non-termination points, by using the pixel intensity distribution features extracted by the adaptive ray-shooting model. Compared with the previous work, the experimental results on multiple neuron datasets and retinal blood vessel datasets show that our method significantly improves the detection accuracy rate by about 10% in challenging datasets.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信