ERN冷冻电镜联合仪器试点项目:第一阶段

Maureen Dougherty, M. Zink, J. V. Oehsen, Kenneth Dalenberg, Bala Desinghu, J. Kaelber, Jeremy Schafer, J. Goodhue, Wolf Hey, Morgan Ludgwig, Boyd Wilson, Coleman McKnight
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引用次数: 0

摘要

研究网络生态系统(ERN) CryoEM远程仪器试点项目的启动是为了响应从NSF (OAC-2018927)资助的ERN系列社区外展活动的数百名参与者收集的反馈和调查数据,这些数据表明,结构生物学仪器驱动的科学正被迫从自给自足的岛屿过渡到联邦广域互联网可访问的仪器。它的目标是通过实现ERN联邦OpenCI实验室的仪器CI Cloudlet设计,促进计算和电子显微镜接口上的多机构协作。结论将是一个基于网络的门户网站,利用对仪器的联合访问,利用边缘计算与云计算相结合的工作流程,以及对实验参数调整和决策的实时监控。其目的是通过这些科学工具的民主化,促进团队科学和科学创新,重点是代表性不足和资源不足的机构。本文讨论了最新的第1阶段部署工作
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The ERN Cryo-EM Federated Instrument Pilot Project: Phase 1
The Ecosystem for Research Networking (ERN) CryoEM Remote Instrument Pilot Project was launched in response to feedback and survey data collected from hundreds of participants of the ERN series of NSF (OAC-2018927) funded community outreach events revealing that Structural Biology instrument driven science is being forced to transition from self-contained islands to federated wide-area internet accessible instruments. Its goal is to facilitate multi-institutional collaboration at the interface of computing and electron microscopy through the implementation of the ERN Federated OpenCI Lab’s Instrument CI Cloudlet design. The conclusion will be a web-based portal leveraging federated access to the instrument, workflows utilizing edge computing in conjunction with cloud computing and real-time monitoring for experimental parameter adjustments and decisions. The intention is to foster team science and scientific innovation, with emphasis on under-represented and under-resourced institutions, through the democratization of these scientific instruments. This paper discusses the latest Phase 1 deployment efforts
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