图聚类的模块化优化方法的尺度和质量

Sayan Ghosh, M. Halappanavar, Antonino Tumeo, A. Kalyanaraman
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引用次数: 10

摘要

与网络中的其他顶点相比,现实世界的图展示了被称为“社区”或“集群”的结构,这些结构由一组顶点组成,它们之间的连通性相对较高。图聚类或社区检测是一种基本的图操作,用于分析计算生物学、网络安全、电网等领域中出现的现实世界图。与其他图算法类似,由于内存访问不规律和固有的顺序性,当前的社区检测算法很难实现并行化。然而,为了分析大型网络,开发能够利用现代超级计算机的架构特征的可伸缩的图聚类并行实现是很重要的。为了响应2019年的流图挑战,我们在ALCF Theta超级计算机上使用Vite对我们的分布式内存社区检测进行了质量和性能分析,Vite是我们对流行的Louvain方法的分布式内存实现。众所周知,Louvain等依赖于模块化最大化的聚类方法存在分辨率限制问题,无法识别特定大小的聚类。因此,我们还包括快速跟踪阻力方法的共享内存实现的质量分析,与Louvain在挑战数据集上的比较。此外,我们为我们的分布式内存实现引入了一个边缘平衡的图分布,这大大减少了通信,使总体执行时间提高了80%。除了性能/质量分析之外,我们还使用具有超过10亿个边的真实图形,详细介绍了分布式内存集群实现的功耗/能耗和内存流量。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Scaling and Quality of Modularity Optimization Methods for Graph Clustering
Real-world graphs exhibit structures known as “communities” or “clusters” consisting of a group of vertices with relatively high connectivity between them, as compared to the rest of the vertices in the network. Graph clustering or community detection is a fundamental graph operation used to analyze real-world graphs occurring in the areas of computational biology, cybersecurity, electrical grids, etc. Similar to other graph algorithms, owing to irregular memory accesses and inherently sequential nature, current algorithms for community detection are challenging to parallelize. However, in order to analyze large networks, it is important to develop scalable parallel implementations of graph clustering that are capable of exploiting the architectural features of modern supercomputers.In response to the 2019 Streaming Graph Challenge, we present quality and performance analysis of our distributed-memory community detection using Vite, which is our distributed memory implementation of the popular Louvain method, on the ALCF Theta supercomputer.Clustering methods such as Louvain that rely on modularity maximization are known to suffer from the resolution limit problem, preventing identification of clusters of certain sizes. Hence, we also include quality analysis of our shared-memory implementation of the Fast-tracking Resistance method, in comparison with Louvain on the challenge datasets.Furthermore, we introduce an edge-balanced graph distribution for our distributed memory implementation, that significantly reduces communication, offering up to 80% improvement in the overall execution time. In addition to performance/quality analysis, we also include details on the power/energy consumption, and memory traffic of the distributed-memory clustering implementation using real-world graphs with over a billion edges.
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