基于基因组蛋白质组数据的预测分析:基于机器学习的新统计方法

理 小森, 真透 江口
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引用次数: 0

摘要

目前,由于生物或医学领域的数据格式发生了巨大变化,必须开发适当的统计方法来进行高维和小样本数据分析。特别是,在不久的将来,将临床数据与基因组数据一起分析将是普遍的。在这篇综述文章中,我们介绍了目前几种与基因组和蛋白质组学数据相关的分析方法,并描述了一些在统计性能上的局限性或问题。在本文的前一部分中,我们解释了一个p»n问题,这是生物信息学中数据分析的基本挑战。特别地,我们考虑了使用微阵列数据作为特征向量预测治疗效果的典型问题p»n。然后,我们介绍了一些新的基于ROC曲线下面积的增强方法。在介绍了几种增强方法的应用后,总结了目前存在的问题,并对未来进行了展望。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
ゲノム・プロテオミクスデータを用いた予測解析:機械学習による新しい統計的手法
At the present day, it becomes imperative to develop appropriate statistical methods for high-dimensional and small sample data analysis because data formats in the biological or medical fields have been dramatically changed. Especially, it will be common in the near future to analyze clinical data together with genomic data. In this review paper, we introduce several current approaches to the analysis relating to genomic and proteomic data, and describe some limitations or problems in the statistical performance.In the former part of this paper, we explain a problem of p»n, which is the fundamental challenge in data analysis in bioinformatics. In particular, we consider a typical problem of p»n in prediction of treatment effects using microarray data as feature vectors. Then, we introduce some new boosting methods based on the area under the ROC curve. After showing some applications of the boosting methods, we summarize the present problems and refer to outlook for the future.
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