Gregory Yauney, Keith Angelino, David Edlund, Pratik Shah
{"title":"基于卷积神经网络的荧光生物标记物分类与白光图像专家注释","authors":"Gregory Yauney, Keith Angelino, David Edlund, Pratik Shah","doi":"10.1109/BIBE.2017.00-37","DOIUrl":null,"url":null,"abstract":"Fluorescent biomarkers are important indicators of disease, but imaging them can require specialized and often-expensive devices. Periodontal and dental diseases resulting from microbial plaque biofilms, if diagnosed early with biomarker images and expert knowledge, can be treated to prevent occurrences of serious systemic illnesses. We report two convolutional neural network classifiers trained with dentist annotations of disease signatures and fluorescent porphyrin biomarker images to identify dental plaque in white light images as a per-pixel binary classification task. The classifiers were trained and tested with millions of image patches from two datasets collected from 27 consenting adults using handheld intraoral cameras. The areas under the receiver operating characteristic curves for the test sets were calculated to be 0.7694 and 0.8720. Once trained, the classifiers predict the location of plaque in white light images without requiring specialized biomarker imaging devices or expert intervention. This generalized approach can be useful in other domains where diagnostic biomarker predicting can augment expert knowledge using standard white light images.","PeriodicalId":262603,"journal":{"name":"2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE)","volume":"26 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2017-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"15","resultStr":"{\"title\":\"Convolutional Neural Network for Combined Classification of Fluorescent Biomarkers and Expert Annotations using White Light Images\",\"authors\":\"Gregory Yauney, Keith Angelino, David Edlund, Pratik Shah\",\"doi\":\"10.1109/BIBE.2017.00-37\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Fluorescent biomarkers are important indicators of disease, but imaging them can require specialized and often-expensive devices. Periodontal and dental diseases resulting from microbial plaque biofilms, if diagnosed early with biomarker images and expert knowledge, can be treated to prevent occurrences of serious systemic illnesses. We report two convolutional neural network classifiers trained with dentist annotations of disease signatures and fluorescent porphyrin biomarker images to identify dental plaque in white light images as a per-pixel binary classification task. The classifiers were trained and tested with millions of image patches from two datasets collected from 27 consenting adults using handheld intraoral cameras. The areas under the receiver operating characteristic curves for the test sets were calculated to be 0.7694 and 0.8720. Once trained, the classifiers predict the location of plaque in white light images without requiring specialized biomarker imaging devices or expert intervention. This generalized approach can be useful in other domains where diagnostic biomarker predicting can augment expert knowledge using standard white light images.\",\"PeriodicalId\":262603,\"journal\":{\"name\":\"2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE)\",\"volume\":\"26 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"15\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/BIBE.2017.00-37\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/BIBE.2017.00-37","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Convolutional Neural Network for Combined Classification of Fluorescent Biomarkers and Expert Annotations using White Light Images
Fluorescent biomarkers are important indicators of disease, but imaging them can require specialized and often-expensive devices. Periodontal and dental diseases resulting from microbial plaque biofilms, if diagnosed early with biomarker images and expert knowledge, can be treated to prevent occurrences of serious systemic illnesses. We report two convolutional neural network classifiers trained with dentist annotations of disease signatures and fluorescent porphyrin biomarker images to identify dental plaque in white light images as a per-pixel binary classification task. The classifiers were trained and tested with millions of image patches from two datasets collected from 27 consenting adults using handheld intraoral cameras. The areas under the receiver operating characteristic curves for the test sets were calculated to be 0.7694 and 0.8720. Once trained, the classifiers predict the location of plaque in white light images without requiring specialized biomarker imaging devices or expert intervention. This generalized approach can be useful in other domains where diagnostic biomarker predicting can augment expert knowledge using standard white light images.