面向计算实验的可重用性:从知识发现过程中获取和共享研究对象

A. Lefebvre, M. Spruit, Wienand A. Omta
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引用次数: 8

摘要

从生物医学科学到信号处理的许多领域都呼吁通过共享代码和数据来进行更多可重复的研究。与此同时,解决生物医学领域数据分析瓶颈的迫切需求产生了对更多交互式数据分析解决方案的需求。这些交互式解决方案面向湿实验室用户,而生物信息学家青睐自定义分析工具。在这篇立场文件中,我们通过将代码和数据共享作为可再现性的黄金标准来阐述为什么可再现性研究忽略了数据分析中的重要挑战。我们提出了新的方法来设计嵌入数据探索的可重用性约束的交互式工具。最后,我们寻求将我们的解决方案与Research Objects相结合,因为它们有望在计算工作的可重用性和部分再现性方面带来有希望的进步。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Towards reusability of computational experiments: Capturing and sharing Research Objects from knowledge discovery processes
Calls for more reproducible research by sharing code and data are released in a large number of fields from biomedical science to signal processing. At the same time, the urge to solve data analysis bottlenecks in the biomedical field generates the need for more interactive data analytics solutions. These interactive solutions are oriented towards wet lab users whereas bioinformaticians favor custom analysis tools. In this position paper we elaborate on why Reproducible Research, by presenting code and data sharing as a gold standard for reproducibility misses important challenges in data analytics. We suggest new ways to design interactive tools embedding constraints of reusability with data exploration. Finally, we seek to integrate our solution with Research Objects as they are expected to bring promising advances in reusability and partial reproducibility of computational work.
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