分布式记忆冰盖模拟中网格奇异点检测的并行图算法

Ian Bogle, K. Devine, M. Perego, S. Rajamanickam, George M. Slota
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引用次数: 3

摘要

我们提出了一种新的分布式内存并行算法,用于检测退化网格特征,这些特征可能导致冰盖网格模拟中的奇异性。识别和删除网格特征,如断开的组件(冰山)或铰链顶点(从陆地分离的冰半岛)可以显著提高迭代求解器的收敛性。由于冰盖在模拟过程中不断演变,因此重要的是,检测算法可以在模拟过程中就地运行——并行运行,计算时间可以忽略不计——以便在退化特征(例如,崩解的冰山)发展时可以检测到。我们提出了一种分布式内存,基于bfs的标签传播方法来退化特征检测,该方法足够高效,可以在冰盖模拟的每个步骤中调用,同时正确识别冰盖网格的所有退化特征。我们的方法在MPAS Albany Land Ice (MALI)模型的1536个核上,在0.0561秒内找到了包含1300万个顶点的网格中的所有退化特征。与之前使用的串行预处理方法相比,我们观察到我们的算法加速了46,000倍,并提供了在仿真中动态检测退化特征的额外能力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A Parallel Graph Algorithm for Detecting Mesh Singularities in Distributed Memory Ice Sheet Simulations
We present a new, distributed-memory parallel algorithm for detection of degenerate mesh features that can cause singularities in ice sheet mesh simulations. Identifying and removing mesh features such as disconnected components (icebergs) or hinge vertices (peninsulas of ice detached from the land) can significantly improve the convergence of iterative solvers. Because the ice sheet evolves during the course of a simulation, it is important that the detection algorithm can run in situ with the simulation --- running in parallel and taking a negligible amount of computation time --- so that degenerate features (e.g., calving icebergs) can be detected as they develop. We present a distributed memory, BFS-based label-propagation approach to degenerate feature detection that is efficient enough to be called at each step of an ice sheet simulation, while correctly identifying all degenerate features of an ice sheet mesh. Our method finds all degenerate features in a mesh with 13 million vertices in 0.0561 seconds on 1536 cores in the MPAS Albany Land Ice (MALI) model. Compared to the previously used serial pre-processing approach, we observe a 46,000x speedup for our algorithm, and provide additional capability to do dynamic detection of degenerate features in the simulation.
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