Aryan Rahimi-Midani, Kyoung-Ho Kim, Seon-Woo Lee, S. Jung, T. Choi
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引用次数: 1
摘要
从稻田土壤中分离到多种芽孢杆菌,16S rRNA基因序列分析显示蜡样芽孢杆菌数量最多。菌株BC1对茄枯丝核菌有一定的抑菌活性。从同一土壤样品中分离到感染菌株BC1的噬菌体。分离得到的噬菌体PK16头长100±5 nm,尾长200±5 nm,为二十面体,属于肌病毒科。对全线性dsDNA基因组进行分析,全长158,127 bp, G + C含量为39.9%,包含235个开放阅读框和19个tRNA基因(包括1个假基因)。Blastp分析表明,PK16基因组编码的蛋白质与七种不同噬菌体的蛋白质最接近。基于主要衣壳蛋白的相邻连接系统进化树显示,噬菌体PK16与韩国发酵食品中分离的噬菌体JBP901和BCP8-2具有很强的聚类性。
Isolation and Characterization of a Bacteriophage Preying an Antifungal Bacterium
Several Bacillus species were isolated from rice field soils, and 16S rRNA gene sequence analysis showed that Bacillus cereus was the most abundant. A strain named BC1 showed antifungal activity against Rhizoctonia solani. Bacteriophages infecting strain BC1 were isolated from the same soil sample. The isolated phage PK16 had an icosahedral head of 100 ± 5 nm and tail of 200 ± 5 nm, indicating that it belonged to the family Myoviridae. Analysis of the complete linear dsDNA genome revealed a 158,127-bp genome with G + C content of 39.9% comprising 235 open reading frames as well as 19 tRNA genes (including 1 pseudogene). Blastp analysis showed that the proteins encoded by the PK16 genome had the closest hits to proteins of seven different bacteriophages. A neighbor-joining phylogenetic tree based on the major capsid protein showed a robust clustering of phage PK16 with phage JBP901 and BCP8-2 isolated from Korean fermented food.