Rehmadanta Sitepu, Fira Dwijayanti, C. D. Yoedistira
{"title":"简提市公共卫生中心未检测到结核转化期治疗患者血样中结核分枝杆菌基因的PCR检测","authors":"Rehmadanta Sitepu, Fira Dwijayanti, C. D. Yoedistira","doi":"10.15416/ijcp.2022.11.1.22","DOIUrl":null,"url":null,"abstract":"The conversion phase in tuberculosis treatment examines patients to ensure the possibility of further advancement. Despite its low specificity, microscopic evaluation is a standard method at public health centers. Moreover, the biased results from this method form a new problem related to multidrug-resistant tuberculosis (MDR-TB). Molecular approaches are known for their high specificity and accuracy in microbial identification. Therefore, this study aimed to compare the specificity and sensitivity of molecular and microscopic methods. The sample used was 17 blood of tuberculosis patients in the conversion phase accompanied by one positive and negative control collected from October to November 2020. The DNA sequence was 16s RNA with forwarding ACT GAG ATA CGG CCC AGA CT and reverse primer TCA CGA ACA ACG CGA CAA AC. Furthermore, the research was conducted by optimizing variations in the number of cycles, temperature melting (Tm), and template DNA concentration. The results showed 279 bp length of PCR product, under the optimum conditions under 35 cycles, Tm of 60˚C, and template DNA concentration of 5 µmol. The PCR result identified that 2 of 17 samples contain positive Mycobacterium tuberculosis. Meanwhile, none was positive on microscopic evaluation. Therefore, there are different results between microscopic and molecular methods.","PeriodicalId":351729,"journal":{"name":"Indonesian Journal of Clinical Pharmacy","volume":"17 4 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2022-03-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The Emerge of Mycobacterium tuberculosis Gene from Blood Sample of Tuberculosis Conversion Phase Treatment Patient Using PCR which Staining Evaluation has Not Detected in Janti Public Health Center\",\"authors\":\"Rehmadanta Sitepu, Fira Dwijayanti, C. D. Yoedistira\",\"doi\":\"10.15416/ijcp.2022.11.1.22\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The conversion phase in tuberculosis treatment examines patients to ensure the possibility of further advancement. Despite its low specificity, microscopic evaluation is a standard method at public health centers. Moreover, the biased results from this method form a new problem related to multidrug-resistant tuberculosis (MDR-TB). Molecular approaches are known for their high specificity and accuracy in microbial identification. Therefore, this study aimed to compare the specificity and sensitivity of molecular and microscopic methods. The sample used was 17 blood of tuberculosis patients in the conversion phase accompanied by one positive and negative control collected from October to November 2020. The DNA sequence was 16s RNA with forwarding ACT GAG ATA CGG CCC AGA CT and reverse primer TCA CGA ACA ACG CGA CAA AC. Furthermore, the research was conducted by optimizing variations in the number of cycles, temperature melting (Tm), and template DNA concentration. The results showed 279 bp length of PCR product, under the optimum conditions under 35 cycles, Tm of 60˚C, and template DNA concentration of 5 µmol. The PCR result identified that 2 of 17 samples contain positive Mycobacterium tuberculosis. Meanwhile, none was positive on microscopic evaluation. Therefore, there are different results between microscopic and molecular methods.\",\"PeriodicalId\":351729,\"journal\":{\"name\":\"Indonesian Journal of Clinical Pharmacy\",\"volume\":\"17 4 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-03-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Indonesian Journal of Clinical Pharmacy\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.15416/ijcp.2022.11.1.22\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Indonesian Journal of Clinical Pharmacy","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.15416/ijcp.2022.11.1.22","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
结核病治疗的转换阶段检查患者,以确保进一步进展的可能性。尽管其特异性较低,但显微镜评估是公共卫生中心的标准方法。此外,该方法的偏倚结果形成了与耐多药结核病(MDR-TB)相关的新问题。分子方法在微生物鉴定中具有较高的特异性和准确性。因此,本研究旨在比较分子法和显微法的特异性和敏感性。所用样本为2020年10月至11月收集的17例转化期结核病患者的血液,并附有1例阳性和阴性对照。DNA序列为16s RNA,具有正向ACT GAG ATA CGG CCC AGA CT和反向引物TCA CGA ACA ACG CGA CAA AC。此外,通过优化循环次数、温度熔融(Tm)和模板DNA浓度的变化进行了研究。结果表明,PCR产物长度为279 bp,最佳条件为35个循环,温度为60℃,模板DNA浓度为5µmol。PCR结果显示,17份样品中有2份结核分枝杆菌阳性。同时,无一人在微观评价上呈阳性。因此,微观方法和分子方法的结果是不同的。
The Emerge of Mycobacterium tuberculosis Gene from Blood Sample of Tuberculosis Conversion Phase Treatment Patient Using PCR which Staining Evaluation has Not Detected in Janti Public Health Center
The conversion phase in tuberculosis treatment examines patients to ensure the possibility of further advancement. Despite its low specificity, microscopic evaluation is a standard method at public health centers. Moreover, the biased results from this method form a new problem related to multidrug-resistant tuberculosis (MDR-TB). Molecular approaches are known for their high specificity and accuracy in microbial identification. Therefore, this study aimed to compare the specificity and sensitivity of molecular and microscopic methods. The sample used was 17 blood of tuberculosis patients in the conversion phase accompanied by one positive and negative control collected from October to November 2020. The DNA sequence was 16s RNA with forwarding ACT GAG ATA CGG CCC AGA CT and reverse primer TCA CGA ACA ACG CGA CAA AC. Furthermore, the research was conducted by optimizing variations in the number of cycles, temperature melting (Tm), and template DNA concentration. The results showed 279 bp length of PCR product, under the optimum conditions under 35 cycles, Tm of 60˚C, and template DNA concentration of 5 µmol. The PCR result identified that 2 of 17 samples contain positive Mycobacterium tuberculosis. Meanwhile, none was positive on microscopic evaluation. Therefore, there are different results between microscopic and molecular methods.