商品集群的并行光学

Poonam Goyal, S. Kumari, Dhruv Kumar, S. Balasubramaniam, Navneet Goyal, Saiyedul Islam, Jagat Sesh Challa
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引用次数: 11

摘要

在本文中,我们提出了一种算法DOPTICS,这是一种流行的基于密度的聚类排序算法OPTICS的并行化版本。并行化光学是一项挑战,因为它具有很强的顺序数据访问行为。为了实现高并行性,提出了一种利用底层索引结构的数据并行方法。我们对商品集群中的处理器节点以及处理器中的跨核实现了所提出的算法。此外,该算法得到的聚类与经典光学完全相同,而不是现有的唯一并行光学实现。我们在商品集群上演示了所提出算法的性能,该集群通常是分布式和共享内存系统的组合。在多个不同维数的大型真实数据集和合成数据集上的实验结果表明,该方法具有较快的速度和可扩展性。所获得的速度是显著的,并且发现随着处理元素数量的增加可以很好地扩展。本文提出的DOPTICS算法的性能改进是由于算法优化和并行化策略。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Parallelizing OPTICS for Commodity Clusters
In this paper, we propose an algorithm, DOPTICS, a parallelized version of a popular density based cluster-ordering algorithm OPTICS. Parallelizing OPTICS is challenging because of its strong sequential data access behavior. To achieve high parallelism, a data parallel approach that exploits the underlying indexing structure is proposed. We implement the proposed algorithm for processor nodes in a commodity cluster as well as across cores in a processor. Moreover, the clusters obtained by our algorithm are exactly same as that of classical OPTICS unlike the only existing implementation of the parallel OPTICS. We demonstrate the performance of the proposed algorithm on a commodity cluster which is typically a combination of distributed and shared memory systems. Experimental results on several large real and synthetic data sets with varying dimensions are presented to show speed up and scalability achieved. The speed up obtained is remarkable and is found to scale well with increasing number of processing elements. Performance improvements of the proposed DOPTICS algorithm are due to algorithmic optimizations and parallelization strategy.
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