利用最大拓扑匹配探索物种分布模型的差异

Jorge Poco, Harish Doraiswamy, M. Talbert, J. Morisette, Cláudio T. Silva
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引用次数: 3

摘要

物种分布模型(SDM)用于帮助理解驱动各种植物和动物物种分布的因素。这些模型通常是高维标量函数,其中域的维度对应于模型算法的预测变量。理解和探索模型之间的差异有助于生态学家了解他们的数据或对系统的理解不完整的领域,并将有助于指导这些地区的进一步调查。这些差异也表明了模型间不确定性的一个重要来源。然而,使用现有的工具来执行这种分析是麻烦的,而且通常是不切实际的,它允许手动探索模型,通常是一维曲线。在本文中,我们提出了一个基于拓扑的框架,以帮助生态学家直接在高维域中探索各种sdm的差异。为了实现这一点,我们引入了最大拓扑匹配的概念,该概念计算两个标量函数的相似极值之间的位置感知对应关系。然后使用匹配来计算两个函数之间的相似性。我们还设计了一个可视化界面,允许生态学家使用它们的拓扑特征来探索sdm,并研究使用最大拓扑匹配发现的模型对之间的差异。我们通过使用不同数据集的几个用例展示了所提出框架的效用,并报告了从生态学家那里获得的反馈。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Using maximum topology matching to explore differences in species distribution models
Species distribution models (SDM) are used to help understand what drives the distribution of various plant and animal species. These models are typically high dimensional scalar functions, where the dimensions of the domain correspond to predictor variables of the model algorithm. Understanding and exploring the differences between models help ecologists understand areas where their data or understanding of the system is incomplete and will help guide further investigation in these regions. These differences can also indicate an important source of model to model uncertainty. However, it is cumbersome and often impractical to perform this analysis using existing tools, which allows for manual exploration of the models usually as 1-dimensional curves. In this paper, we propose a topology-based framework to help ecologists explore the differences in various SDMs directly in the high dimensional domain. In order to accomplish this, we introduce the concept of maximum topology matching that computes a locality-aware correspondence between similar extrema of two scalar functions. The matching is then used to compute the similarity between two functions. We also design a visualization interface that allows ecologists to explore SDMs using their topological features and to study the differences between pairs of models found using maximum topological matching. We demonstrate the utility of the proposed framework through several use cases using different data sets and report the feedback obtained from ecologists.
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