{"title":"KERAGAMAN GENETIK BULU BABI TRIPNEUTES GRATILLA (LINNAEUS, 1758) DI PERAIRAN PANTAI DESA LAMBAKARA, SUMBA TIMUR, NUSA TENGGARA TIMUR (NTT)","authors":"Aryok Nomleni, Gilbert Turnip, Lutfi Adin Afandi","doi":"10.58487/akrabjuara.v6i4.2061","DOIUrl":null,"url":null,"abstract":"A total of 14 samples were taken from the coastal waters of East Sumba. The sample was isolated from genomic DNA using the KIT GENE AID method using GO TAQ Green PCR Mix material and universal primer pairs LCO1490 and HCO2198 to determine the expression of the amplified COI gene (PCR). The PCR results were sent to First Base CO (Malaysia) for sequencing. The sequence length of the COI gene sequencing of the genus Tripneustes from NTT waters using universal primers LCO1490 and HCO2198 was 690-700 bp. The results showed that the genetic diversity of the sea urchin population in the coastal waters of Sumba was 0.83516 while the value of nucleotide diversity was 0.00516. The total genetic distance ranged from 0.000-0.010. All population genetic distances are still relatively low because genetic distances less than 0.010-0.099 are included in the low category. This close genetic distance causes connectivity between the two populations because there is gene flow. Based on the phylogenetic analysis, it was found that the populations in Sumba waters and some areas (outgroups) were genetically close","PeriodicalId":267841,"journal":{"name":"Akrab Juara : Jurnal Ilmu-ilmu Sosial","volume":"29 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2022-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Akrab Juara : Jurnal Ilmu-ilmu Sosial","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.58487/akrabjuara.v6i4.2061","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
从东松巴沿海水域共采集了14个样本。使用GO TAQ Green PCR Mix材料和通用引物对LCO1490和HCO2198,采用KIT GENE AID方法从基因组DNA中分离样品,测定扩增的COI基因(PCR)的表达情况。PCR结果送至马来西亚First Base CO进行测序。使用通用引物LCO1490和HCO2198对NTT水域的Tripneustes属COI基因进行测序,序列长度为690 ~ 700 bp。结果表明,松巴海域海胆种群遗传多样性为0.83516,核苷酸多样性为0.00516。总遗传距离在0.000 ~ 0.010之间。所有群体的遗传距离仍然相对较低,因为遗传距离小于0.010-0.099属于低类别。这种紧密的遗传距离导致了两个种群之间的连通性,因为存在基因流动。通过系统发育分析,发现松巴海域和部分地区(外群)的种群在遗传上接近
KERAGAMAN GENETIK BULU BABI TRIPNEUTES GRATILLA (LINNAEUS, 1758) DI PERAIRAN PANTAI DESA LAMBAKARA, SUMBA TIMUR, NUSA TENGGARA TIMUR (NTT)
A total of 14 samples were taken from the coastal waters of East Sumba. The sample was isolated from genomic DNA using the KIT GENE AID method using GO TAQ Green PCR Mix material and universal primer pairs LCO1490 and HCO2198 to determine the expression of the amplified COI gene (PCR). The PCR results were sent to First Base CO (Malaysia) for sequencing. The sequence length of the COI gene sequencing of the genus Tripneustes from NTT waters using universal primers LCO1490 and HCO2198 was 690-700 bp. The results showed that the genetic diversity of the sea urchin population in the coastal waters of Sumba was 0.83516 while the value of nucleotide diversity was 0.00516. The total genetic distance ranged from 0.000-0.010. All population genetic distances are still relatively low because genetic distances less than 0.010-0.099 are included in the low category. This close genetic distance causes connectivity between the two populations because there is gene flow. Based on the phylogenetic analysis, it was found that the populations in Sumba waters and some areas (outgroups) were genetically close