可折叠自避步行枚举的研究进展

C. Guyeux, Jean-Claude Charr, J. B. Abdo, J. Demerjian
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引用次数: 1

摘要

自回避行走由于其内在的重要性和广泛的应用领域,已经被研究了很长时间。最近,在研究嵌入在现有蛋白质结构预测(PSP)软件中的两种不同SAW操作时,发现了SAW的一个新子集,称为可折叠SAW。从那以后,人们进行了几次尝试,以了解更多关于这些散步的信息,包括计算它们的数量。然而,计算可折叠saw的数量似乎是一项艰巨的工作,目前的超级计算机无法计算长度超过≈30步的可折叠saw。在本文中,我们介绍了这种枚举的新进展,包括理论(数学)和实践(计算机科学)。首先,通过研究一个已知的称为谨慎结构的特殊子集,提出了可折叠结构数目的下界。然后首次研究了三角形和六边形晶格,得到了关于这些晶格上可折叠saw枚举的新结果。最后,设计了一种并行遗传算法来发现长度为≈100步的新型不可折叠saw,该算法的结果是有希望的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Advances in the enumeration of foldable self-avoiding walks
Self-avoiding walks (SAWs) have been studied for a long time due to their intrinsic importance and the many application fields in which they operate. A new subset of SAWs, called foldable SAWs, has recently been discovered when investigating two different SAW manipulations embedded within existing protein structure prediction (PSP) software. Since then, several attempts have been made to find out more about these walks, including counting them. However, calculating the number of foldable SAWs appeared as a tough work, and current supercomputers fail to count foldable SAWs of length exceeding ≈ 30 steps. In this article, we present new progress in this enumeration, both theoretical (mathematics) and practical (computer science). A lower bound for the number of foldable SAWs is firstly proposed, by studying a special subset called prudent SAWs that is better known. The triangular and hexagonal lattices are then investigated for the first time, leading to new results about the enumeration of foldable SAWs on such lattices. Finally, a parallel genetic algorithm has been designed to discover new non-foldable SAWs of lengths ≈ 100 steps, and the results obtained with this algorithm are promising.
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