hadoop框架上的大图形的最大团枚举

PPAA '14 Pub Date : 2014-02-16 DOI:10.1145/2567634.2567640
N. Dasari, D. Ranjan, M. Zubair
{"title":"hadoop框架上的大图形的最大团枚举","authors":"N. Dasari, D. Ranjan, M. Zubair","doi":"10.1145/2567634.2567640","DOIUrl":null,"url":null,"abstract":"Maximal clique enumeration (MCE) problem for very large graphs appears in many critical applications such as community detection in social networks, aligning 3D protein sequences, finding motifs in genomic data, identifying co-expressed genes and data analytics in communication networks. It is not unusual to have graphs of billions of nodes and edges in these applications. The MCE problem is NP hard, but a number of algorithms both sequential and parallel have been proposed that work efficiently for real graphs. In addition to the large sizes of the input graphs, the MCE algorithms in general result in large intermediate data making it even more challenging to efficiently process the data. Recently an approach has been proposed, referred to as pbitMCE, which is shown to outperform or perform equally well compared to the existing approaches. The approach uses degeneracy ordering of vertices which plays a vital role in the performance of the algorithm. Degeneracy ordering of vertices can be generated in linear time. However it is challenging to find the degeneracy ordering in a distributed environment as it requires extensive communication between the nodes. In some cases generating the ordering can take a significant amount of time. In such cases a different ordering such as ordering by degree can be a better choice than the degeneracy ordering. In this paper we experimentally study the impact of various ordering of vertices on the performance of an MCE algorithm in the context of mapreduce framework. We present an implementation of pbitMCE using mapreduce that takes a large graph and an ordering of vertices as input and enumerates all the maximal cliques. To support the study, we present the experimental results on various graphs using different orderings. The results show that the degree ordering performs comparable to the degeneracy ordering in most cases while it performs poorer in the case of large graphs.","PeriodicalId":379963,"journal":{"name":"PPAA '14","volume":"8 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2014-02-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"8","resultStr":"{\"title\":\"Maximal clique enumeration for large graphs on hadoop framework\",\"authors\":\"N. Dasari, D. Ranjan, M. Zubair\",\"doi\":\"10.1145/2567634.2567640\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Maximal clique enumeration (MCE) problem for very large graphs appears in many critical applications such as community detection in social networks, aligning 3D protein sequences, finding motifs in genomic data, identifying co-expressed genes and data analytics in communication networks. It is not unusual to have graphs of billions of nodes and edges in these applications. The MCE problem is NP hard, but a number of algorithms both sequential and parallel have been proposed that work efficiently for real graphs. In addition to the large sizes of the input graphs, the MCE algorithms in general result in large intermediate data making it even more challenging to efficiently process the data. Recently an approach has been proposed, referred to as pbitMCE, which is shown to outperform or perform equally well compared to the existing approaches. The approach uses degeneracy ordering of vertices which plays a vital role in the performance of the algorithm. Degeneracy ordering of vertices can be generated in linear time. However it is challenging to find the degeneracy ordering in a distributed environment as it requires extensive communication between the nodes. In some cases generating the ordering can take a significant amount of time. In such cases a different ordering such as ordering by degree can be a better choice than the degeneracy ordering. In this paper we experimentally study the impact of various ordering of vertices on the performance of an MCE algorithm in the context of mapreduce framework. We present an implementation of pbitMCE using mapreduce that takes a large graph and an ordering of vertices as input and enumerates all the maximal cliques. To support the study, we present the experimental results on various graphs using different orderings. The results show that the degree ordering performs comparable to the degeneracy ordering in most cases while it performs poorer in the case of large graphs.\",\"PeriodicalId\":379963,\"journal\":{\"name\":\"PPAA '14\",\"volume\":\"8 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2014-02-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"8\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"PPAA '14\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1145/2567634.2567640\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"PPAA '14","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1145/2567634.2567640","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 8

摘要

超大图的最大团枚举(MCE)问题出现在许多关键应用中,如社交网络中的社区检测、3D蛋白质序列对齐、基因组数据中的基序查找、识别共表达基因和通信网络中的数据分析。在这些应用程序中,拥有数十亿个节点和边的图并不罕见。MCE问题是NP困难的,但是已经提出了许多顺序和并行算法,可以有效地处理实际图。除了输入图的大尺寸之外,MCE算法通常会产生大的中间数据,这使得有效处理数据更具挑战性。最近提出了一种方法,称为pbitMCE,与现有方法相比,该方法表现得更好或表现得同样好。该方法使用顶点的退化排序,这对算法的性能起着至关重要的作用。顶点的退化排序可以在线性时间内生成。然而,在分布式环境中找到退化排序是一个挑战,因为它需要节点之间广泛的通信。在某些情况下,生成排序可能需要花费大量时间。在这种情况下,不同的排序,如按度排序,可能是比简并排序更好的选择。本文通过实验研究了mapreduce框架下不同顶点排序对MCE算法性能的影响。我们提出了一个使用mapreduce的pbitMCE实现,它将一个大的图和一个顶点排序作为输入,并枚举所有最大的团。为了支持研究,我们给出了不同排序的不同图的实验结果。结果表明,在大多数情况下,度排序的性能与简并排序相当,而在大图的情况下,度排序的性能较差。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Maximal clique enumeration for large graphs on hadoop framework
Maximal clique enumeration (MCE) problem for very large graphs appears in many critical applications such as community detection in social networks, aligning 3D protein sequences, finding motifs in genomic data, identifying co-expressed genes and data analytics in communication networks. It is not unusual to have graphs of billions of nodes and edges in these applications. The MCE problem is NP hard, but a number of algorithms both sequential and parallel have been proposed that work efficiently for real graphs. In addition to the large sizes of the input graphs, the MCE algorithms in general result in large intermediate data making it even more challenging to efficiently process the data. Recently an approach has been proposed, referred to as pbitMCE, which is shown to outperform or perform equally well compared to the existing approaches. The approach uses degeneracy ordering of vertices which plays a vital role in the performance of the algorithm. Degeneracy ordering of vertices can be generated in linear time. However it is challenging to find the degeneracy ordering in a distributed environment as it requires extensive communication between the nodes. In some cases generating the ordering can take a significant amount of time. In such cases a different ordering such as ordering by degree can be a better choice than the degeneracy ordering. In this paper we experimentally study the impact of various ordering of vertices on the performance of an MCE algorithm in the context of mapreduce framework. We present an implementation of pbitMCE using mapreduce that takes a large graph and an ordering of vertices as input and enumerates all the maximal cliques. To support the study, we present the experimental results on various graphs using different orderings. The results show that the degree ordering performs comparable to the degeneracy ordering in most cases while it performs poorer in the case of large graphs.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信