{"title":"用于多尺度系统生物学的彩色Petri网。snoopy中当前的建模和分析能力","authors":"Fei Liu, M. Heiner, Ming-Jang Yang","doi":"10.1109/ISB.2013.6623788","DOIUrl":null,"url":null,"abstract":"Systems biology has introduced a number of multiscale challenges, which, however, can be tackled by colored Petri nets, but not by traditional approaches like ordinary differential equations or Petri nets. In this paper, after a brief covering of multiscale challenges of systems biology, we report the modeling and analysis capabilities of colored Petri nets, which Snoopy by now offers, and describe how these capabilities are used to address those multiscale challenges. In doing so, we aim to attract more researchers to use the powerful capabilities of colored Petri nets to model and analyze multiscale biological systems.","PeriodicalId":151775,"journal":{"name":"2013 7th International Conference on Systems Biology (ISB)","volume":"79 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2013-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"4","resultStr":"{\"title\":\"Colored Petri nets for multiscale systems biology - Current modeling and analysis capabilities in snoopy\",\"authors\":\"Fei Liu, M. Heiner, Ming-Jang Yang\",\"doi\":\"10.1109/ISB.2013.6623788\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Systems biology has introduced a number of multiscale challenges, which, however, can be tackled by colored Petri nets, but not by traditional approaches like ordinary differential equations or Petri nets. In this paper, after a brief covering of multiscale challenges of systems biology, we report the modeling and analysis capabilities of colored Petri nets, which Snoopy by now offers, and describe how these capabilities are used to address those multiscale challenges. In doing so, we aim to attract more researchers to use the powerful capabilities of colored Petri nets to model and analyze multiscale biological systems.\",\"PeriodicalId\":151775,\"journal\":{\"name\":\"2013 7th International Conference on Systems Biology (ISB)\",\"volume\":\"79 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2013-10-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"4\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2013 7th International Conference on Systems Biology (ISB)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/ISB.2013.6623788\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2013 7th International Conference on Systems Biology (ISB)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ISB.2013.6623788","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Colored Petri nets for multiscale systems biology - Current modeling and analysis capabilities in snoopy
Systems biology has introduced a number of multiscale challenges, which, however, can be tackled by colored Petri nets, but not by traditional approaches like ordinary differential equations or Petri nets. In this paper, after a brief covering of multiscale challenges of systems biology, we report the modeling and analysis capabilities of colored Petri nets, which Snoopy by now offers, and describe how these capabilities are used to address those multiscale challenges. In doing so, we aim to attract more researchers to use the powerful capabilities of colored Petri nets to model and analyze multiscale biological systems.
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