粒子单元的混合编程和多gpu实现

E. Krishnasamy, I. Vasileska, L. Kos, P. Bouvry
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引用次数: 0

摘要

核聚变物理中的数值模拟对于研究核聚变装置、空间和天体物理系统至关重要。聚变装置的等离子体模拟需要动力学方法来处理极端非线性方法。其中最常用的等离子体动力学模拟代码是粒子池(PIC)。随着CPU、GPU和其他加速器(如fpga和量子处理器)的结合,世界范围内的高性能计算系统正变得越来越强大。此外,我们已经注意到,有几台百亿亿次的机器在世界范围内运行;一个典型的例子是Frontier(橡树岭国家实验室)百亿亿次计算机。与此同时,科学算法也在做出同样的努力,以有效地使用强大的高性能计算系统。许多编程框架(例如,OpenACC、OpenMP卸载和SYCL)主要为现有的科学代码提供出色的可移植性支持,以使用exascale HPC系统。这项工作展示了基于PIC算法的简单粒子单元(SIMPIC)的混合和多个gpu功能(或可移植性)。首先,我们实现了混合(MPI+OpenMP)可移植性和多GPU (MPI帮助下的多节点GPU)卸载可移植性。与普通MPI版本相比,第一个实现的速度提高了40%,第二个实现的速度比混合(MPI+OpenMP)实现的速度提高了40%。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Hybrid programming and multiple GPUs implementation for Particle-In-Cell
Numerical modelling in fusion physics is crucial for studying fusion devices, space, and astrophysical systems. The plasma simulations of fusion devices demand a kinetic approach to handle extreme nonlinearities methods. One of the most used plasma kinetic simulation codes is the Particle-In-Cell (PIC). The HPC systems worldwide are getting more powerful with the combination of CPU, GPU, and other accelerators (e.g., FPGAs and Quantum Processors). Moreover, we can already notice that several exascale machines are operational worldwide; one typical example is the Frontier (Oak Ridge National Laboratory) exascale machine. In parallel, the same effort is being made for scientific algorithms to use robust HPC systems efficiently. Many programming frameworks (e.g., OpenACC, OpenMP offloading, and SYCL) mainly offer excellent support portability to the existing scientific codes to use the exascale HPC systems. This work demonstrates hybrid and multiple GPUs capabilities (or portability) for Simple Particle-In-Cell (SIMPIC) based on the PIC algorithm. First, we have implemented the hybrid (MPI+OpenMP) portability and multiple GPUs (multiple node GPU with the help of MPI) offloading portability. The first implementation gains a speed up to 40% compared to the plain MPI version, and the second implementation achieves up to 40% speedups compared to the hybrid (MPI+OpenMP) implementation.
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