基于HeteSim评分预测人类药物与靶标之间的关联

Le Wei, Fang Zheng
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引用次数: 0

摘要

在过去的几十年里,药物靶标预测吸引了很多学者的关注,也产生了许多经典的算法和模型。我们从机器学习算法入手,通过生物网络的数据处理,构建药物靶点的异构网络。我们构建了药物-药物类网络、药物-靶点相似网络和靶点-靶点相似网络,然后将上述三种网络整合为一个异构网络,并在异构网络中选择“药物-药物-靶点”路径和“药物-靶点-靶点”路径两条元路径,计算两条路径的归一化HeteSim分数,并将两条路径的HeteSim分数进行整合,得到最终结果。在异构网络中基于不同路径计算药物-靶点相互作用评分(HDTA_HeteSim),并将该算法应用于药物和靶点预测。此外,在留一交叉验证中,HDTA_HeteSim模型的AUC (ROC曲线下面积)为0.9540,具有可靠的预测性能。我们还使用DT-Hybrid方法和HDTA_HeteSim方法分别对溴隐亭药物预测进行了分析,发现我们的算法效率更高。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Predicting the Association Between Human Drugs and Targets based on HeteSim Score
In the past decades, drug target prediction has attracted a lot of scholars' attention, and many classic algorithms and models have also been generated. We study from machine learning algorithms and construct a heterogeneous network of drug targets through data processing of biological networks. We construct a drug-drug-like network, a drug-target similar network, and a target-target similar network, and then integrate the above three networks into one heterogeneous network, and select two meta-paths in the heterogeneous network "drug-drug-target" path and the "drug-target-target" path, the normalized HeteSim scores for both paths were calculated, and the HeteSim scores for the two paths were integrated to obtain the final result. The drug-target interaction score (HDTA_HeteSim) is calculated based on different paths in heterogeneous networks, and the algorithm is applied to drug and target prediction. In addition, the AUC (area under the ROC curve) of the HDTA_HeteSim model in the leave-one-out cross-validation has a value of 0.9540, which achieves reliable prediction performance. We also used the DT-Hybrid method and the HDTA_HeteSim method to separately analyze the bromocriptine drug predictions, and found that our algorithm are more efficiency.
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