{"title":"不同临床来源多药耐药鲍曼不动杆菌rplb基因的遗传变异","authors":"A. Hamzah","doi":"10.22401/JNUS.21.3.14","DOIUrl":null,"url":null,"abstract":"In this study, two hundred specimens were collected from patients suffering from urinary tract infection, wound infection, otitis infection and respiratory tract infection (fifty specimens from each infection). After laboratory diagnosis by biochemical tests and confirmation by advance tests (VITEK- 2 Compact system), only twenty isolates were diagnosed as Acinetobacter baumannii (10%). Then sensitivity test was carried out of all these isolates by using twelve antibiotics, all isolates exhibited various levels of resistance to different antibiotics. Then DNA extraction of all twenty isolates followed by amplification of rplB gene aggainst using PCR with specific primers. DNA sequencing of all isolates was done, then alignmented sequences in NCBI and drew phylogenetic tree by using Geneious 9 software among locally isolates alone and then between them and high identity globally identified registred isolates in Gene Bank. Distribution of locally isolates in phylogenetic tree showed three different groups. The phylogenetic tree showed there were eight locally isolates differed from the standard isolates. From these locally isolates, one isolate (AE_12) was documented in NCBI under accession number (LOCUS KY818058) of nucleotides sequence and protein ID \"ARV90996.1\".","PeriodicalId":255225,"journal":{"name":"Journal of Al-Nahrain University of Science","volume":"305 4 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2018-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Genetic Variations in rplBGene Associated with Multidrug Resistance AcinetobacterbaumanniiIsolated from Different Clinical Sources\",\"authors\":\"A. Hamzah\",\"doi\":\"10.22401/JNUS.21.3.14\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"In this study, two hundred specimens were collected from patients suffering from urinary tract infection, wound infection, otitis infection and respiratory tract infection (fifty specimens from each infection). After laboratory diagnosis by biochemical tests and confirmation by advance tests (VITEK- 2 Compact system), only twenty isolates were diagnosed as Acinetobacter baumannii (10%). Then sensitivity test was carried out of all these isolates by using twelve antibiotics, all isolates exhibited various levels of resistance to different antibiotics. Then DNA extraction of all twenty isolates followed by amplification of rplB gene aggainst using PCR with specific primers. DNA sequencing of all isolates was done, then alignmented sequences in NCBI and drew phylogenetic tree by using Geneious 9 software among locally isolates alone and then between them and high identity globally identified registred isolates in Gene Bank. Distribution of locally isolates in phylogenetic tree showed three different groups. The phylogenetic tree showed there were eight locally isolates differed from the standard isolates. From these locally isolates, one isolate (AE_12) was documented in NCBI under accession number (LOCUS KY818058) of nucleotides sequence and protein ID \\\"ARV90996.1\\\".\",\"PeriodicalId\":255225,\"journal\":{\"name\":\"Journal of Al-Nahrain University of Science\",\"volume\":\"305 4 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2018-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Al-Nahrain University of Science\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.22401/JNUS.21.3.14\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Al-Nahrain University of Science","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.22401/JNUS.21.3.14","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 2
摘要
本研究采集尿路感染、伤口感染、中耳炎感染和呼吸道感染患者标本200例(每种感染各50例)。经实验室生化诊断和预先检测(VITEK- 2 Compact system)确认,诊断为鲍曼不动杆菌的仅有20株(10%)。采用12种抗生素对所有分离株进行敏感性试验,所有分离株对不同抗生素均表现出不同程度的耐药。然后提取所有分离株的DNA,用特异性引物PCR扩增rplB基因。对所有分离株进行DNA测序,并在NCBI中对序列进行比对,利用gene9软件绘制本地分离株与全球高同源性鉴定的已登记分离株之间的系统发育树。本地分离株在系统发育树上的分布表现为3个不同的类群。系统发育树分析显示,有8个本地分离株与标准分离株存在差异。从这些本地分离株中,有1株(AE_12)在NCBI中被记录,核苷酸序列的accession number (LOCUS KY818058)和蛋白ID为“ARV90996.1”。
Genetic Variations in rplBGene Associated with Multidrug Resistance AcinetobacterbaumanniiIsolated from Different Clinical Sources
In this study, two hundred specimens were collected from patients suffering from urinary tract infection, wound infection, otitis infection and respiratory tract infection (fifty specimens from each infection). After laboratory diagnosis by biochemical tests and confirmation by advance tests (VITEK- 2 Compact system), only twenty isolates were diagnosed as Acinetobacter baumannii (10%). Then sensitivity test was carried out of all these isolates by using twelve antibiotics, all isolates exhibited various levels of resistance to different antibiotics. Then DNA extraction of all twenty isolates followed by amplification of rplB gene aggainst using PCR with specific primers. DNA sequencing of all isolates was done, then alignmented sequences in NCBI and drew phylogenetic tree by using Geneious 9 software among locally isolates alone and then between them and high identity globally identified registred isolates in Gene Bank. Distribution of locally isolates in phylogenetic tree showed three different groups. The phylogenetic tree showed there were eight locally isolates differed from the standard isolates. From these locally isolates, one isolate (AE_12) was documented in NCBI under accession number (LOCUS KY818058) of nucleotides sequence and protein ID "ARV90996.1".