木虱生物学:成虫亚洲柑橘木虱的表达基因

W. Hunter, S. Dowd, C. Katsar, R. Shatters, C. McKenzie, D. Hall
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引用次数: 20

摘要

亚洲柑桔木虱(半翅目:木虱科)被认为是柑桔黄龙病(HLB)的主要传播媒介。与HLB相关的植物致病菌给全球柑橘产业造成经济损失。为了更好地了解柑橘木虱的一般生物学,我们对成虫木虱进行了测序。从木虱中分离的基因很少,但有几个昆虫基因组数据集可供比较。我们将木虱的数据与线虫、秀丽隐杆线虫、果蝇、黑腹线虫、蜜蜂、蜜蜂、蚊子、埃及伊蚊和人类、智人的基因组数据集进行了比较,因为这些基因组数据集完成了更全面的注释。我们描述了亚洲柑橘木虱D. citri的第一个est数据集。共测序了5906个cDNA克隆,得到了4595个高质量的ESTs。电子去除1487个与细菌和病毒匹配的序列,留下一个cdna组装,共得到636个木虱序列(544个contigs加92个singlets)。使用(swissprot -颤抖03-2007)和NCBI, nr数据库对这些序列进行BLAST分析,在非冗余蛋白或核酸数据库中均有53%的“无显著匹配”,为科学界提供了新的信息。柑橘基因表达数据集推进了当前木虱基因鉴定和生理过程的研究工作。这些基因和蛋白质的知识正被用于开发新的管理策略,以对付木虱和其他半翅目食液昆虫。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Psyllid Biology: Expressed Genes in Adult Asian Citrus Psyllids, Diaphorina citri Kuwayama
Where it occurs the Asian citrus psyllid, Diaphorina citri, Kuwayama (Hemiptera: Psyllidae) is considered the primary vector of Huanglongbing, HLB, disease of citrus trees. The plant pathogenic bacterium associated with HLB causes economic losses to citrus industries worldwide. To better understand the general biology of D. citri, we undertook a sequencing project from adult psyllids. Few genes have been isolated from psyllids however several insect genomic datasets are available for comparisons. We compared the psyllid data to genomic datasets of nematode, C. elegans, fruit fly, D. melanogaster, honey bee, A. mellifera, mosquito, A. aegypti, and human, H. sapiens since these have completed more thorough levels of annotation. We describe the first data set of ESTs from D. citri, the Asian citrus psyllid. A total of 5,906 cDNA clones were sequenced, resulting in 4,595 high-quality ESTs. Electronic removal of 1,487 sequences which matched to bacteria and viruses left an assembly of cDNAs resulting in a total of 636 psyllid sequences (544 contigs plus 92 singlets). The sequences underwent BLAST analyses using (Swissprot-Tremble 03-2007) and NCBI, nr databases which returned 53% with 'No significant match' in either the non-redundant protein or nucleic acid databases, providing new information to the scientific community. The D. citri gene expression data set advances current research efforts in the identification of genes and physiological processes of psyllids. Knowledge of these genes and proteins are being used in the development of novel management strategies against psyllids, and other sap feeding insects within the Order: Hemip- tera.
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