基于CNN和注意力- bilstm的抗生素太赫兹频谱识别方法

Yuanyuan Xu, Tao Li, Huijuan Fang
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引用次数: 0

摘要

太赫兹光谱具有指纹光谱的特性,可以实现抗生素的鉴别。基于传统学习方法的抗生素鉴定已经取得了一定的成果。基于深度学习的模型可以自动提取核特征,卷积神经网络(CNN)模型依靠卷积层提取特征。针对抗生素谱序列特征维数较高的特点,提出了一种新的CNN模型和注意双向长短期记忆(BiLSTM)。我们使用CNN来降低抗生素序列的维数。然而,卷积核限制了CNN在处理时序信号数据时的长期依赖性。BiLSTM可以有效地解决这一问题,并捕获时序信号前后的依赖关系。在BiLSTM中加入注意机制,进一步提取抗生素谱的细微特征,能够更好地捕捉最重要的局部信息。全连接网络达到抗生素识别的目的。在实验中,该模型的F1得分为0.98,证明了该模型具有较强的识别能力和较好的可解释性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An Antibiotic Terahertz Spectrum Recognition Method Based on CNN and Attention-BiLSTM
The terahertz spectrum has the characteristics of a fingerprint spectrum, which can realize the identification of antibiotics. Antibiotic identification based on traditional learning methods has achieved certain results. Models based on deep learning can automatically extract kernel features, and convolutional neural network (CNN) models rely on a convolution layer to extract features. In view of the high characteristic dimension of antibiotic spectrum sequences, we propose a new CNN model and attention bidirectional long short-term memory (BiLSTM). We use CNN to reduce the dimension of an antibiotic sequence. However, the convolution kernel limits a CNN's long-term dependence in processing time-series signal data. BiLSTM can effectively solve this problem and capture the dependence before and after the timing signal. The attention mechanism is added to BiLSTM to further extract the subtle features of the antibiotic spectrum, and can better capture the most important local information. A full connection network achieves the purpose of antibiotic identification. In experiments, the F1 score of the proposed model is 0.98, confirming its strong recognition ability and good interpretability.
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