面向实验室的早期检测研究网络数据管理与处理系统

R. Verma, Andrew F. Hart, C. Mattmann, D. Crichton, H. Kincaid, S. Kelly, M. Joyce, P. Zimdars, D. Tabb, Jay D. Holman, Matthew Chambers, K. Anton, M. Colbert, C. Patriotis, S. Srivastava
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引用次数: 1

摘要

美国国立卫生研究院(NIH)、美国国家癌症研究所的早期检测研究网络(EDRN)是一个跨机构合作倡议,旨在加速癌症生物标志物研究的临床应用。在过去的十年中,作为EDRN的信息中心(IC),我们的职责是开发一个全面的信息服务基础设施以及一套软件工具和服务来支持这一整体计划。我们最近开发了一个名为实验室目录和档案服务(LabCAS)的新应用程序,其重点是将EDRN IC数据管理和处理能力扩展到EDRN实验室。通过利用与管理和处理NASA地球和行星数据集相同的技术,我们为EDRN研究人员提供了管理其实验室数据的有效方法。更具体地说,LabCAS使EDRN研究人员能够可靠地存档他们的实验数据,有选择地与其他研究人员以受控的方式共享这些数据,并通过高度可配置的数据分析管道深入了解这些数据,这些数据是为广泛的生物标志物相关实验量身定制的。这项特殊的合作利用了NASA喷气推进实验室、范德比尔特大学医学中心和达特茅斯医学院的专业知识,并建立在NASA和NIH之间现有的跨政府合作的基础上。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A Laboratory-Targeted, Data Management and Processing System for the Early Detection Research Network
The National Institutes of Health (NIH), National Cancer Institute's Early Detection Research Network (EDRN) is a cross-institutional collaborative initiative seeking to accelerate the clinical application of cancer biomarker research. Over the past decade, it has been our role, as EDRN's Informatics Center (IC), to develop a comprehensive information services infrastructure as well as a set of software tools and services to support this overall initiative. We have recently developed a novel application called the Laboratory Catalog and Archive Service (LabCAS) whose focus is to extend EDRN IC data management and processing capabilities to EDRN laboratories. By leveraging the same technologies used to manage and process NASA Earth and Planetary data sets, we offer EDRN researchers an effective way of managing their laboratory data. More specifically, LabCAS enables EDRN researchers to reliably archive their experimental data, to optionally share these data in a controlled manner with other researchers, and to gain insight into these data through highly configurable data analysis pipelines tailored to the broad range of biomarker related experiments. This particular collaboration leverages expertise from NASA's Jet Propulsion Laboratory, Vanderbilt University Medical Center, and Dartmouth Medical School, as well as builds upon existing cross-governmental collaboration between NASA and the NIH.
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