基于并行gpu的调强放疗优化模拟退火算法

P. Galanakou, T. Leventouri, A. Georgakilas, G. Kalantzis
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引用次数: 0

摘要

调强放射治疗(IMRT)显示出将规定剂量递送到计划靶体积(PTV)的能力,同时将递送到危险器官(OARs)的剂量降至最低。元启发式算法,其中模拟退火算法(SAA),已被提出用于优化IMRT。尽管SAA具有作为全局优化器的优势,但由于优化变量的规模很大,IMRT优化是一项广泛的计算任务。因此,随机算法,如SAA,需要大量的计算资源。为了阐明SAA在高维优化任务(如IMRT优化)中的性能改进,我们首次介绍了一种基于并行图形处理单元(GPU)的SAA,该SAA在MATLAB平台上开发,符合放射治疗研究(CERR)的计算环境,用于IMRT治疗计划。我们的策略是首先确定代码的主要“瓶颈”,然后相应地在GPU上并行化这些瓶颈。在四个不同的GPU卡上进行了性能测试,并与在CPU上执行的算法的串行版本进行了比较。我们的研究表明,加速因子逐渐增加,作为所有四个gpu的光束数量的函数。特别是在使用K40m卡时,最大加速系数达到了~ 33。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A parallelized GPU-based simulating annealing algorithm for intensity modulated radiation therapy optimization
Intensity modulated radiation therapy (IMRT) exhibits the ability to deliver the prescribed dose to the planning target volume (PTV), while minimizing the delivered dose to the organs at risk (OARs). Metaheuristic algorithms, among them the simulating annealing algorithm (SAA), have been proposed in the past for optimization of IMRT. Despite the advantage of the SAA to be a global optimizer, IMRT optimization is an extensive computational task due to the large scale of the optimization variables. Therefore stochastic algorithms, such as the SAA, require significant computational resources. In an effort to elucidate the performance improvement of the SAA in highly dimensional optimization tasks, such as the IMRT optimization, we introduce for the first time to our best knowledge a parallel graphic processing unit (GPU)-based SAA developed in MATLAB platform and compliant with the computational environment for radiotherapy research (CERR) for IMRT treatment planning. Our strategy was firstly to identify the major “bottlenecks” of our code and secondly to parallelize those on the GPU accordingly. Performance tests were conducted on four different GPU cards in comparison to a serial version of the algorithm executed on a CPU. Our studies have shown a gradual increase of the speedup factor as a function of the number of beamlets for all four GPUs. Particularly, a maximum speedup factor of ∼33 was achieved when the K40m card was utilized.
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