用数据库框架增强量子化学应用的自适应中间件

Lakshminarasimhan Seshagiri, Meng-Shiou Wu, M. Sosonkina, Zhao Zhang, M. Gordon, Michael W. Schmidt
{"title":"用数据库框架增强量子化学应用的自适应中间件","authors":"Lakshminarasimhan Seshagiri, Meng-Shiou Wu, M. Sosonkina, Zhao Zhang, M. Gordon, Michael W. Schmidt","doi":"10.1109/IPDPSW.2010.5470760","DOIUrl":null,"url":null,"abstract":"Quantum chemistry applications such as the General Atomic and Molecular Electronic Structure System (GAMESS) that can execute on a complex peta-scale parallel computing environment has a large number of input parameters that affect the overall performance. The application characteristics vary according to the input parameters. This is due to the difference in the usage of resources like network bandwidth, I/O and main memory, according to the input parameters. Effective execution of applications in a parallel computing environment that share such resources require some sort of adaptive mechanism to enable efficient usage of these resources. In our previous work, we have integrated GAMESS with an adaptive middleware NICAN (Network Information Conveyer and Application Notification) for dynamic adaptations during heavy load conditions that modify execution of GAMESS computations on a per-iteration basis. This leads to better application performance. In this research, we have expanded the structure of NICAN in order to include other input parameters based on which application performance can be controlled. The application performance has been analyzed on different architectures and a tuning strategy has been identified. A generic database framework has been incorporated in the existing NICAN mechanism so as to aid this tuning strategy.","PeriodicalId":329280,"journal":{"name":"2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW)","volume":"32 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2010-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"5","resultStr":"{\"title\":\"Enhancing adaptive middleware for quantum chemistry applications with a database framework\",\"authors\":\"Lakshminarasimhan Seshagiri, Meng-Shiou Wu, M. Sosonkina, Zhao Zhang, M. Gordon, Michael W. Schmidt\",\"doi\":\"10.1109/IPDPSW.2010.5470760\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Quantum chemistry applications such as the General Atomic and Molecular Electronic Structure System (GAMESS) that can execute on a complex peta-scale parallel computing environment has a large number of input parameters that affect the overall performance. The application characteristics vary according to the input parameters. This is due to the difference in the usage of resources like network bandwidth, I/O and main memory, according to the input parameters. Effective execution of applications in a parallel computing environment that share such resources require some sort of adaptive mechanism to enable efficient usage of these resources. In our previous work, we have integrated GAMESS with an adaptive middleware NICAN (Network Information Conveyer and Application Notification) for dynamic adaptations during heavy load conditions that modify execution of GAMESS computations on a per-iteration basis. This leads to better application performance. In this research, we have expanded the structure of NICAN in order to include other input parameters based on which application performance can be controlled. The application performance has been analyzed on different architectures and a tuning strategy has been identified. A generic database framework has been incorporated in the existing NICAN mechanism so as to aid this tuning strategy.\",\"PeriodicalId\":329280,\"journal\":{\"name\":\"2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW)\",\"volume\":\"32 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2010-04-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"5\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/IPDPSW.2010.5470760\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/IPDPSW.2010.5470760","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 5

摘要

量子化学应用程序,如通用原子和分子电子结构系统(GAMESS),可以在复杂的千万亿级并行计算环境中执行,有大量的输入参数影响整体性能。应用特性根据输入参数的不同而变化。这是由于根据输入参数的不同,网络带宽、I/O和主存等资源的使用情况有所不同。要在共享这些资源的并行计算环境中有效地执行应用程序,需要某种自适应机制来实现对这些资源的有效使用。在我们之前的工作中,我们将GAMESS与自适应中间件NICAN(网络信息传送和应用程序通知)集成在一起,以便在重载条件下动态适应,从而在每次迭代的基础上修改GAMESS计算的执行。这将带来更好的应用程序性能。在这项研究中,我们扩展了NICAN的结构,以便包括其他可以控制应用性能的输入参数。在不同的体系结构上分析了应用程序性能,并确定了调优策略。一个通用的数据库框架已被纳入现有的NICAN机制,以帮助这一调整战略。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Enhancing adaptive middleware for quantum chemistry applications with a database framework
Quantum chemistry applications such as the General Atomic and Molecular Electronic Structure System (GAMESS) that can execute on a complex peta-scale parallel computing environment has a large number of input parameters that affect the overall performance. The application characteristics vary according to the input parameters. This is due to the difference in the usage of resources like network bandwidth, I/O and main memory, according to the input parameters. Effective execution of applications in a parallel computing environment that share such resources require some sort of adaptive mechanism to enable efficient usage of these resources. In our previous work, we have integrated GAMESS with an adaptive middleware NICAN (Network Information Conveyer and Application Notification) for dynamic adaptations during heavy load conditions that modify execution of GAMESS computations on a per-iteration basis. This leads to better application performance. In this research, we have expanded the structure of NICAN in order to include other input parameters based on which application performance can be controlled. The application performance has been analyzed on different architectures and a tuning strategy has been identified. A generic database framework has been incorporated in the existing NICAN mechanism so as to aid this tuning strategy.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信