DNA序列外显子预测的多分类器软决策融合方法

Ismail M. El-Badawy, A. Aziz, S. Gasser, M. Khedr
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引用次数: 8

摘要

预测脱氧核糖核酸(DNA)序列外显子的位置对生物学家来说是一个重要的问题。本文提出了一种解决这一问题的新方法。与已发表的研究不同,外显子位置的预测依赖于来自单个分类器的硬决策,而该预测方法依赖于来自两个分类器的软决策融合。在提出的方法中,我们以不同的方式利用滑动窗口离散傅立叶变换(DFT),该方法通常用于检测外显子的3基周期性特征。这里的新颖性取决于使用不同数值映射方案的两个分类器获得软决策,而不是硬决策,并将它们融合在决策融合中心,以获得关于外显子位置预测的最终全局决策。基于HMR195数据集真实数据的仿真结果表明,与传统的硬决策单分类器方法相比,提出的软决策融合方法具有更好的预测性能。此外,该方法可以很容易地扩展到两个以上的分类器。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A new multiple classifiers soft decisions fusion approach for exons prediction in DNA sequences
Prediction of exons locations in deoxyribonucleic acid (DNA) sequences is a significant issue for biologists. This paper proposes a new method to solve this problem. Unlike the published studies, in which the prediction of exons locations depends on hard decisions from a single classifier, the proposed prediction approach depends on fusion of soft decisions from two classifiers. In the proposed approach we utilize the sliding window discrete Fourier transform (DFT), which is normally used to detect exons 3-base periodicity feature, in a different manner. The novelty here depends on obtaining soft decisions, rather than hard decisions, from two classifiers using different numerical mapping schemes, and fuses them in a decision fusion center to obtain a final global decision about the prediction of exons locations. Simulation results based on real data performed on the HMR195 dataset showed that the proposed soft decisions fusion method achieves better prediction performance compared to the traditional hard decision single classifier method. Moreover the proposed method can easily be extended to more than two classifiers.
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