GeneGrid:基于网格的生物信息学应用集成和实验执行解决方案

P. Jithesh, Noel Kelly, Paul Donachy, T. Harmer, R. Perrott, M. McCurley, M. Townsley, J. Johnston, S. McKee
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引用次数: 15

摘要

GeneGrid是由贝尔法斯特电子科学中心发起的一个工业研发合作项目,隶属于英国电子科学计划,与参与抗体和药物研发的商业伙伴合作。GeneGrid通过创建“虚拟生物信息学实验室”,为科学家,特别是生物学家提供了一个平台,以安全、可靠和可扩展的方式访问他们的集体技能、经验和结果。它可以无缝集成跨越全球多个管理域和位置的无数异构应用程序和数据集,并通过简单的用户友好界面将这些应用程序和数据集呈现给科学家。本文介绍了GeneGrid的网格服务如何参与生物信息学应用的集成以及在计算机实验的创建和执行中。还提供了一个真实的用例场景,涉及到识别属于蛋白质家族的新成员,以演示GeneGrid的功能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
GeneGrid: grid based solution for bioinformatics application integration and experiment execution
GeneGrid is a collaborative industrial R&D project initiated by the Belfast e-Science Centre, under the UK e-Science Programme, with commercial partners involved in the research and development of antibodies and drugs. GeneGrid provides a platform for scientists, especially biologists, to access their collective skills, experiences and results in a secure, reliable and scalable manner through the creation of a 'Virtual Bioinformatics Laboratory'. It enables the seamless integration of a myriad of heterogeneous applications and datasets that span multiple administrative domains and locations across the globe, and present these to the scientist through a simple user friendly interface. This paper presents how the grid services of GeneGrid are involved in the integration of bioinformatics applications as well as in the creation and execution of in silico experiments. A real use case scenario is also presented, involving the identification of novel members belonging to a protein family, for demonstrating the capabilities of GeneGrid.
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