最大移位字符串匹配算法:混合Berry Ravindran, Zhu-Takaoka和来回匹配算法

M. Hasan, Prince Mahmud, Mst. Merina Khatun, Md. Hasibur Rahman, Md. Tarequl Islam
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引用次数: 0

摘要

随着生物数据库的指数级增长,从这些数据库中找到准确的字符串是一项极具挑战性和必要的任务。各种字符串模式搜索策略在解决字符串搜索问题中发挥了重要作用。字符串模式匹配算法的主要目的是减少依赖于尝试和字符比较的运行时间。为了更有效地解决这些字符串模式匹配问题,本文提出了一种新的混合策略——最大移位算法(LSA)。我们提出的新的混合算法结合了Berry Ravindran, Zhu-Takaoka最有利的特征,以及定制的Back & Forth Matching (BFM)算法。选择这三种算法是因为它们在计数尝试和字符比较测试中表现更好。我们测试了三种不同类型的算法来分析我们提出的LSA算法的性能,在文献中讨论了BRR、maximum-shift和快速搜索算法。我们使用英文文本、DNA和蛋白质序列作为数据,因为它们的性质不同。该算法在运行时间、总尝试次数和字符比较等性能方面优于先前的算法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Largest Shift String Matching Algorithm: Blend of Berry Ravindran, Zhu-Takaoka and Back & Forth Matching Algorithm
With the exponential growth of biological databases, it is a highly challenging and essential task to find the exact string from these databases. Various string pattern searching strategies played an essential role in solving string search problems. Mainly, the string pattern matching algorithm aims to reduce the running time which depends on attempts and character comparisons. Our paper proposed a new hybrid strategy, the Largest Shift Algorithm (LSA), to solve these string pattern matching problems more effectively. Our suggested new hybrid algorithm combines the most advantageous characteristics of Berry Ravindran, Zhu-Takaoka, and a customized Back & Forth Matching (BFM) algorithm. These three algorithms were chosen as they perform better in the tests for counting attempts and character comparisons. Three distinct types of algorithms were tested to analyze the performance of our proposed LSA algorithm, discussed in the literature which are BRR, maximum-shift, and quick-search algorithms. We have used English text, DNA, and protein sequences as data for their different nature. The proposed algorithm outperforms the previous algorithms in terms of performance such as runtime, total attempts, and comparisons of character.
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