Yun-Chen Lo, Bing Li, Sooyong Park, K. Shin, Tsung-Yi Ho
{"title":"基于纸张的数字微流控生物芯片的无干扰设计方法","authors":"Yun-Chen Lo, Bing Li, Sooyong Park, K. Shin, Tsung-Yi Ho","doi":"10.1145/3394885.3431609","DOIUrl":null,"url":null,"abstract":"Paper-based digital microfluidic biochips (P-DMFBs) have recently attracted great attention for its low-cost, in-place, and fast fabrication. This technology is essential for agile bio-assay development and deployment. P-DMFBs print electrodes and associate control lines on paper to control droplets and complete bio-assays. However, P-DMFBs have following issues: 1) control line interference may cause unwanted droplet movements, 2) avoiding control interference degrades assay performance and routability, 3) single layer fabrication limits routability, and 4) expensive ink cost limits low-cost benefits of P-DMFBs. To solve above issues, this work proposes an interference-free design methodology to design P-DMFBs with fast assay speed, better routability, and compact printing area. The contributions are as follows: First, we categorize control interference into soft and hard. Second, we identify only soft interference happens and propose to remove soft control interference constraints. Third, we propose an interference-free design methodology. Finally, we propose a cost-efficient ILP-based fluidic design module. Experimental results show proposed method outperforms prior work [14] across all bio-assay benchmarks. Compared to previous work, our cost-optimized designs use only 47%~78% area, gain 3.6%~16.2% more routing resources, and achieve 0.97x~1.5x shorter assay completion time. Our performance-optimized designs can accelerate assay speed by 1.05x~1.65x using 81%~96% printed area.","PeriodicalId":186307,"journal":{"name":"2021 26th Asia and South Pacific Design Automation Conference (ASP-DAC)","volume":"51 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2021-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Interference-Free Design Methodology for Paper-Based Digital Microfluidic Biochips\",\"authors\":\"Yun-Chen Lo, Bing Li, Sooyong Park, K. Shin, Tsung-Yi Ho\",\"doi\":\"10.1145/3394885.3431609\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Paper-based digital microfluidic biochips (P-DMFBs) have recently attracted great attention for its low-cost, in-place, and fast fabrication. This technology is essential for agile bio-assay development and deployment. P-DMFBs print electrodes and associate control lines on paper to control droplets and complete bio-assays. However, P-DMFBs have following issues: 1) control line interference may cause unwanted droplet movements, 2) avoiding control interference degrades assay performance and routability, 3) single layer fabrication limits routability, and 4) expensive ink cost limits low-cost benefits of P-DMFBs. To solve above issues, this work proposes an interference-free design methodology to design P-DMFBs with fast assay speed, better routability, and compact printing area. The contributions are as follows: First, we categorize control interference into soft and hard. Second, we identify only soft interference happens and propose to remove soft control interference constraints. Third, we propose an interference-free design methodology. Finally, we propose a cost-efficient ILP-based fluidic design module. Experimental results show proposed method outperforms prior work [14] across all bio-assay benchmarks. Compared to previous work, our cost-optimized designs use only 47%~78% area, gain 3.6%~16.2% more routing resources, and achieve 0.97x~1.5x shorter assay completion time. Our performance-optimized designs can accelerate assay speed by 1.05x~1.65x using 81%~96% printed area.\",\"PeriodicalId\":186307,\"journal\":{\"name\":\"2021 26th Asia and South Pacific Design Automation Conference (ASP-DAC)\",\"volume\":\"51 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2021-01-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2021 26th Asia and South Pacific Design Automation Conference (ASP-DAC)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1145/3394885.3431609\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2021 26th Asia and South Pacific Design Automation Conference (ASP-DAC)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1145/3394885.3431609","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Interference-Free Design Methodology for Paper-Based Digital Microfluidic Biochips
Paper-based digital microfluidic biochips (P-DMFBs) have recently attracted great attention for its low-cost, in-place, and fast fabrication. This technology is essential for agile bio-assay development and deployment. P-DMFBs print electrodes and associate control lines on paper to control droplets and complete bio-assays. However, P-DMFBs have following issues: 1) control line interference may cause unwanted droplet movements, 2) avoiding control interference degrades assay performance and routability, 3) single layer fabrication limits routability, and 4) expensive ink cost limits low-cost benefits of P-DMFBs. To solve above issues, this work proposes an interference-free design methodology to design P-DMFBs with fast assay speed, better routability, and compact printing area. The contributions are as follows: First, we categorize control interference into soft and hard. Second, we identify only soft interference happens and propose to remove soft control interference constraints. Third, we propose an interference-free design methodology. Finally, we propose a cost-efficient ILP-based fluidic design module. Experimental results show proposed method outperforms prior work [14] across all bio-assay benchmarks. Compared to previous work, our cost-optimized designs use only 47%~78% area, gain 3.6%~16.2% more routing resources, and achieve 0.97x~1.5x shorter assay completion time. Our performance-optimized designs can accelerate assay speed by 1.05x~1.65x using 81%~96% printed area.