基于纸张的数字微流控生物芯片的无干扰设计方法

Yun-Chen Lo, Bing Li, Sooyong Park, K. Shin, Tsung-Yi Ho
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引用次数: 2

摘要

纸基数字微流控生物芯片(P-DMFBs)因其低成本、原位制造和快速制造而受到广泛关注。这项技术对于敏捷的生物分析开发和部署至关重要。p - dmfb打印电极和相关控制线在纸上控制液滴和完成生物分析。然而,p - dmfb存在以下问题:1)控制线干扰可能导致不必要的液滴运动,2)避免控制干扰会降低检测性能和可达性,3)单层制造限制了可达性,4)昂贵的墨水成本限制了p - dmfb的低成本效益。为了解决上述问题,本研究提出了一种无干扰设计方法来设计具有快速分析速度、更好的可达性和紧凑打印面积的p - dmfb。主要贡献如下:首先,我们将控制干扰分为软干扰和硬干扰。其次,我们发现只有软干扰发生,并提出消除软控制干扰约束。第三,我们提出了一种无干扰设计方法。最后,我们提出了一个具有成本效益的基于ilp的流体设计模块。实验结果表明,该方法在所有生物测定基准上优于先前的工作[14]。与之前的工作相比,我们的成本优化设计仅使用了47%~78%的面积,增加了3.6%~16.2%的路由资源,并将分析完成时间缩短了0.97 ~1.5倍。在81%~96%的印刷面积范围内,检测速度可提高1.05 ~1.65倍。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Interference-Free Design Methodology for Paper-Based Digital Microfluidic Biochips
Paper-based digital microfluidic biochips (P-DMFBs) have recently attracted great attention for its low-cost, in-place, and fast fabrication. This technology is essential for agile bio-assay development and deployment. P-DMFBs print electrodes and associate control lines on paper to control droplets and complete bio-assays. However, P-DMFBs have following issues: 1) control line interference may cause unwanted droplet movements, 2) avoiding control interference degrades assay performance and routability, 3) single layer fabrication limits routability, and 4) expensive ink cost limits low-cost benefits of P-DMFBs. To solve above issues, this work proposes an interference-free design methodology to design P-DMFBs with fast assay speed, better routability, and compact printing area. The contributions are as follows: First, we categorize control interference into soft and hard. Second, we identify only soft interference happens and propose to remove soft control interference constraints. Third, we propose an interference-free design methodology. Finally, we propose a cost-efficient ILP-based fluidic design module. Experimental results show proposed method outperforms prior work [14] across all bio-assay benchmarks. Compared to previous work, our cost-optimized designs use only 47%~78% area, gain 3.6%~16.2% more routing resources, and achieve 0.97x~1.5x shorter assay completion time. Our performance-optimized designs can accelerate assay speed by 1.05x~1.65x using 81%~96% printed area.
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