RAMPAGE金属合金电位生成软件的性能分析与优化

P. Roth, H. Shan, D. Riegner, Nikolas Antolin, S. Sreepathi, L. Oliker, Samuel Williams, S. Moore, W. Windl
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引用次数: 3

摘要

RAMPAGE是一个用于拟合金属合金多组分原子间电位函数的程序。在本文中,我们描述了领域科学家和性能工程师之间的协作努力,以提高代码的并行性、可伸缩性和可维护性。我们修改了RAMPAGE,使用消息传递接口(MPI)进行通信和同步,在评估候选潜在功能时使用多个MPI进程,并让其MPI进程执行以前由外部非MPI进程执行的功能。我们将RAMPAGE移植到美国能源部(DOE)的橡树岭领导计算设施(OLCF)的Eos和Titan Cray系统,以及能源部国家能源研究科学计算中心(NERSC)的Cori和Edison系统上运行。我们的修改使8个Eos系统节点的速度提高了7倍,并且在带有Intel Knights Landing处理器的Cori系统上可扩展到2048个进程。为了提高RAMPAGE源代码的可维护性,我们向RAMPAGE开发人员的工作流程引入了几个软件工程最佳实践。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Performance analysis and optimization of the RAMPAGE metal alloy potential generation software
The Rapid Alloy Method for Producing Accurate, General Empirical potential generation toolkit (RAMPAGE) is a program for fitting multicomponent interatomic potential functions for metal alloys. In this paper, we describe a collaborative effort between domain scientists and performance engineers to improve the parallelism, scalability, and maintainability of the code. We modified RAMPAGE to use the Message Passing Interface (MPI) for communication and synchronization, to use more than one MPI process when evaluating candidate potential functions, and to have its MPI processes execute functionality that was previously executed by external non-MPI processes. We ported RAMPAGE to run on the Eos and Titan Cray systems of the United States Department of Energy (DOE)'s Oak Ridge Leadership Computing Facility (OLCF), and the Cori and Edison systems at the DOE's National Energy Research Scientific Computing Center (NERSC). Our modifications resulted in a 7x speedup on 8 Eos system nodes, and scalability up to 2048 processes on the Cori system with Intel Knights Landing processors. To improve maintainability of the RAMPAGE source code, we introduced several software engineering best practices to the RAMPAGE developers' workflow.
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