可扩展的MPI设计在InfiniBand上使用扩展的可靠连接

Matthew J. Koop, J. K. Sridhar, D. Panda
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引用次数: 36

摘要

高性能集群的一个重要组成部分是计算节点互连。InfiniBand是这种系统的互连,由于低延迟(1.0-3.0 mb)和高带宽等特性而获得了广泛的成功。消息传递接口(Message Passing Interface, MPI)是并行科学应用的主流编程模型。因此,MPI库和互连在可伸缩性中起着重要的作用。这些集群不断扩展到不断增加的级别,这使得该角色非常重要。例如,得克萨斯高级计算中心(TACC)的ldquoRangerrdquo系统包含超过60,000个内核和近4000个ib端口。先前的研究表明,当使用InfiniBand的可靠连接(RC)传输时,仅用于连接的内存使用可以达到该级别上每个进程数百兆字节的内存。为了解决这些可伸缩性问题,引入了一种新的InfiniBand传输,即扩展可靠连接。在本文中,我们描述了XRC并设计了基于这种新传输的MPI。我们描述了必须做出的各种设计选择以及XRC允许的各种优化。我们实现了我们的设计,并在InfiniBand集群上对基于rc的设计进行了评估。就通信缓冲区的连接内存和内存效率而言,对所有配置的内存可伸缩性进行了评估。连接内存可伸缩性评估显示,与类似配置的基于rc的设计相比,可能有100倍的改进。使用NAMD进行的评估显示,在jac2000基准测试中基于xrc的原型的性能提高了10%。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Scalable MPI design over InfiniBand using eXtended Reliable Connection
A significant component of a high-performance cluster is the compute node interconnect. InfiniBand, is an interconnect of such systems that is enjoying wide success due to low latency (1.0-3.0 musec) and high bandwidth and other features. The Message Passing Interface (MPI) is the dominant programming model for parallel scientific applications. As a result, the MPI library and interconnect play a significant role in the scalability. These clusters continue to scale to ever-increasing levels making the role very important. As an example, the ldquoRangerrdquo system at the Texas Advanced Computing Center (TACC) includes over 60,000 cores with nearly 4000 InfiniBand ports. Previous work has shown that memory usage simply for connections when using the Reliable Connection (RC) transport of InfiniBand can reach hundreds of megabytes of memory per process at that level. To address these scalability problems a new InfiniBand transport, eXtended Reliable Connection, has been introduced. In this paper we describe XRC and design MPI over this new transport. We describe the variety of design choices that must be made as well as the various optimizations that XRC allows. We implement our designs and evaluate it on an InfiniBand cluster against RC-based designs. The memory scalability in terms of both connection memory and memory efficiency for communication buffers is evaluated for all of the configurations. Connection memory scalability evaluation shows a potential 100 times improvement over a similarly configured RC-based design. Evaluation using NAMD shows a 10% performance improvement for our XRC-based prototype for the jac2000 benchmark.
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