基于数据挖掘技术和人工神经网络的蛋白质定位位点分类性能分析

Md. Shahriare Satu, Tania Akter, Md. Jamal Uddin
{"title":"基于数据挖掘技术和人工神经网络的蛋白质定位位点分类性能分析","authors":"Md. Shahriare Satu, Tania Akter, Md. Jamal Uddin","doi":"10.1109/ECACE.2017.7913023","DOIUrl":null,"url":null,"abstract":"Protein localization prediction is computation approach to predict where a protein resides in a cell. Accurate localization of proteins is needed to provide physiological substance for their function and aberrant localization of protein causes pathogenesis of various human diseases. E.Cott and Yeast are unicellular organism and different proteins allocate in their cell. If those protein are dislocated, then these causes various infections that affected human body adversely. So, the objective of this work is to classify proteins into different cellular localization sites based on amino acid sequences of E.Coli bacterium and Yeast In this experiment, we collect dataset of E.Coli and Yeast from data repository and preprocessed it for further processing. Then we train our dataset with several data mining classification algorithms and artificial neural networks. After classifying both dataset, we compare accuracies among different classifiers and try to find best classifiers for Protein localization sites prediction of E.Coli and Yeast dataset.","PeriodicalId":333370,"journal":{"name":"2017 International Conference on Electrical, Computer and Communication Engineering (ECCE)","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2017-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"18","resultStr":"{\"title\":\"Performance analysis of classifying localization sites of protein using data mining techniques and artificial neural networks\",\"authors\":\"Md. Shahriare Satu, Tania Akter, Md. Jamal Uddin\",\"doi\":\"10.1109/ECACE.2017.7913023\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Protein localization prediction is computation approach to predict where a protein resides in a cell. Accurate localization of proteins is needed to provide physiological substance for their function and aberrant localization of protein causes pathogenesis of various human diseases. E.Cott and Yeast are unicellular organism and different proteins allocate in their cell. If those protein are dislocated, then these causes various infections that affected human body adversely. So, the objective of this work is to classify proteins into different cellular localization sites based on amino acid sequences of E.Coli bacterium and Yeast In this experiment, we collect dataset of E.Coli and Yeast from data repository and preprocessed it for further processing. Then we train our dataset with several data mining classification algorithms and artificial neural networks. After classifying both dataset, we compare accuracies among different classifiers and try to find best classifiers for Protein localization sites prediction of E.Coli and Yeast dataset.\",\"PeriodicalId\":333370,\"journal\":{\"name\":\"2017 International Conference on Electrical, Computer and Communication Engineering (ECCE)\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"18\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2017 International Conference on Electrical, Computer and Communication Engineering (ECCE)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/ECACE.2017.7913023\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2017 International Conference on Electrical, Computer and Communication Engineering (ECCE)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ECACE.2017.7913023","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 18

摘要

蛋白质定位预测是一种预测蛋白质在细胞中位置的计算方法。蛋白质的准确定位是为其功能提供生理物质的必要条件,蛋白质的异常定位是人类各种疾病发病的原因。酵母和酵母都是单细胞生物,它们的细胞内分配着不同的蛋白质。如果这些蛋白质脱位,就会引起各种感染,对人体产生不利影响。因此,本研究的目的是基于大肠杆菌和酵母菌的氨基酸序列将蛋白质分类到不同的细胞定位位点。本实验从数据库中收集大肠杆菌和酵母菌的数据集,并对其进行预处理,以便进一步处理。然后我们用几种数据挖掘分类算法和人工神经网络来训练我们的数据集。在对这两个数据集进行分类后,我们比较了不同分类器的准确率,并试图找到大肠杆菌和酵母数据集蛋白质定位位点预测的最佳分类器。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Performance analysis of classifying localization sites of protein using data mining techniques and artificial neural networks
Protein localization prediction is computation approach to predict where a protein resides in a cell. Accurate localization of proteins is needed to provide physiological substance for their function and aberrant localization of protein causes pathogenesis of various human diseases. E.Cott and Yeast are unicellular organism and different proteins allocate in their cell. If those protein are dislocated, then these causes various infections that affected human body adversely. So, the objective of this work is to classify proteins into different cellular localization sites based on amino acid sequences of E.Coli bacterium and Yeast In this experiment, we collect dataset of E.Coli and Yeast from data repository and preprocessed it for further processing. Then we train our dataset with several data mining classification algorithms and artificial neural networks. After classifying both dataset, we compare accuracies among different classifiers and try to find best classifiers for Protein localization sites prediction of E.Coli and Yeast dataset.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信