用于生物模型全局敏感性分析的分布式软件包

Q. Thai, S. Yu, Yongseong Cho
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引用次数: 0

摘要

数学建模是研究生物系统的重要工具。由于分子水平测量系统的复杂性和技术上的挑战,通常会出现大量模型参数具有不确定值的情况。从单一的估计参数集分析模型动力学是不充分的,容易产生误导性的结果。全局敏感性分析(GSA)已被推荐为开发可靠模型过程中必须具备的步骤。然而,该技术基于蒙特卡罗模拟,需要大量的模型评估和对大量数据的处理来进行灵敏度估计,计算成本高。在这项工作中,我们开发了一个用于生物模型全局敏感性估计的软件包。该软件部署在KISTI高性能计算(HPC)集群环境中,为系统生物学建模者提供web服务。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A distributed software package for global sensitivity analysis of biological models
Mathematical modeling is a vital tool for studying biological systems. Due to the system complexity and technical challenges in molecular level measurement, it is commonly the case that a large number of model parameters have uncertain values. Analyzing model dynamics from a single estimated parameter set is insufficient and liable for misleading results. Global sensitivity analysis (GSA) has been recommended as a must-have step in the process of developing reliable models. However, the technique comes at high computation costs as it is based on Monte Carlo simulation which requires a large number of model evaluations and manipulating on massive data for sensitivity estimation. In this work, we develop a software package for global sensitivity estimation of biological models. The software is deployed on KISTI high performance computing (HPC) cluster environment to provide web-service to system biology modelers.
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